Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30380

Experiment: Sisomicin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30375 and AZOBR_RS30380 are separated by 420 nucleotidesAZOBR_RS30380 and AZOBR_RS30385 are separated by 10 nucleotides AZOBR_RS30375: AZOBR_RS30375 - hypothetical protein, at 159,899 to 161,143 _RS30375 AZOBR_RS30380: AZOBR_RS30380 - histidine kinase, at 161,564 to 162,280 _RS30380 AZOBR_RS30385: AZOBR_RS30385 - Fis family transcriptional regulator, at 162,291 to 163,634 _RS30385 Position (kb) 161 162 163Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 160.931 kb on + strand, within AZOBR_RS30375at 160.932 kb on - strand, within AZOBR_RS30375at 161.673 kb on - strand, within AZOBR_RS30380at 162.188 kb on + strand, within AZOBR_RS30380at 162.189 kb on - strand, within AZOBR_RS30380at 162.189 kb on - strand, within AZOBR_RS30380at 162.577 kb on - strand, within AZOBR_RS30385at 163.188 kb on + strand, within AZOBR_RS30385at 163.188 kb on + strand, within AZOBR_RS30385at 163.189 kb on - strand, within AZOBR_RS30385at 163.189 kb on - strand, within AZOBR_RS30385at 163.189 kb on - strand, within AZOBR_RS30385

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
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160,931 + AZOBR_RS30375 0.83 +0.9
160,932 - AZOBR_RS30375 0.83 -0.7
161,673 - AZOBR_RS30380 0.15 +0.8
162,188 + AZOBR_RS30380 0.87 -3.8
162,189 - AZOBR_RS30380 0.87 -1.7
162,189 - AZOBR_RS30380 0.87 -0.5
162,577 - AZOBR_RS30385 0.21 +0.9
163,188 + AZOBR_RS30385 0.67 +0.8
163,188 + AZOBR_RS30385 0.67 -0.1
163,189 - AZOBR_RS30385 0.67 -0.5
163,189 - AZOBR_RS30385 0.67 +0.6
163,189 - AZOBR_RS30385 0.67 +0.7

Or see this region's nucleotide sequence