Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS30135 and AZOBR_RS30140 are separated by 148 nucleotides AZOBR_RS30140 and AZOBR_RS30145 are separated by 149 nucleotides
AZOBR_RS30135: AZOBR_RS30135 - GntR family transcriptional regulator, at 100,243 to 101,001
_RS30135
AZOBR_RS30140: AZOBR_RS30140 - multidrug transporter, at 101,150 to 102,022
_RS30140
AZOBR_RS30145: AZOBR_RS30145 - formate transporter, at 102,172 to 103,041
_RS30145
Position (kb) 101
102
103 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 100.169 kb on - strand at 100.295 kb on + strand at 100.745 kb on + strand, within AZOBR_RS30135 at 100.745 kb on + strand, within AZOBR_RS30135 at 100.745 kb on + strand, within AZOBR_RS30135 at 100.745 kb on + strand, within AZOBR_RS30135 at 100.745 kb on + strand, within AZOBR_RS30135 at 100.745 kb on + strand, within AZOBR_RS30135 at 100.745 kb on + strand, within AZOBR_RS30135 at 100.745 kb on + strand, within AZOBR_RS30135 at 100.746 kb on - strand, within AZOBR_RS30135 at 100.746 kb on - strand, within AZOBR_RS30135 at 100.746 kb on - strand, within AZOBR_RS30135 at 100.746 kb on - strand, within AZOBR_RS30135 at 100.746 kb on - strand, within AZOBR_RS30135 at 100.746 kb on - strand, within AZOBR_RS30135 at 100.746 kb on - strand, within AZOBR_RS30135 at 100.746 kb on - strand, within AZOBR_RS30135 at 100.746 kb on - strand, within AZOBR_RS30135 at 100.746 kb on - strand, within AZOBR_RS30135 at 100.746 kb on - strand, within AZOBR_RS30135 at 100.914 kb on - strand, within AZOBR_RS30135 at 100.914 kb on - strand, within AZOBR_RS30135 at 100.914 kb on - strand, within AZOBR_RS30135 at 101.074 kb on - strand at 101.284 kb on - strand, within AZOBR_RS30140 at 101.340 kb on + strand, within AZOBR_RS30140 at 101.460 kb on + strand, within AZOBR_RS30140 at 101.461 kb on - strand, within AZOBR_RS30140 at 101.527 kb on - strand, within AZOBR_RS30140 at 101.638 kb on - strand, within AZOBR_RS30140 at 101.739 kb on + strand, within AZOBR_RS30140 at 101.739 kb on + strand, within AZOBR_RS30140 at 101.950 kb on - strand at 102.148 kb on + strand at 102.216 kb on - strand at 102.380 kb on + strand, within AZOBR_RS30145 at 102.381 kb on - strand, within AZOBR_RS30145 at 102.381 kb on - strand, within AZOBR_RS30145 at 102.381 kb on - strand, within AZOBR_RS30145 at 102.381 kb on - strand, within AZOBR_RS30145 at 102.572 kb on + strand, within AZOBR_RS30145 at 102.572 kb on + strand, within AZOBR_RS30145 at 102.572 kb on + strand, within AZOBR_RS30145 at 102.572 kb on + strand, within AZOBR_RS30145 at 102.573 kb on - strand, within AZOBR_RS30145 at 102.611 kb on + strand, within AZOBR_RS30145 at 102.941 kb on + strand, within AZOBR_RS30145
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 100,169 - -0.1 100,295 + -0.4 100,745 + AZOBR_RS30135 0.66 -0.5 100,745 + AZOBR_RS30135 0.66 +0.6 100,745 + AZOBR_RS30135 0.66 -1.0 100,745 + AZOBR_RS30135 0.66 -0.1 100,745 + AZOBR_RS30135 0.66 -0.3 100,745 + AZOBR_RS30135 0.66 -1.6 100,745 + AZOBR_RS30135 0.66 +0.6 100,745 + AZOBR_RS30135 0.66 -1.1 100,746 - AZOBR_RS30135 0.66 -3.5 100,746 - AZOBR_RS30135 0.66 -2.2 100,746 - AZOBR_RS30135 0.66 +0.3 100,746 - AZOBR_RS30135 0.66 -0.0 100,746 - AZOBR_RS30135 0.66 +1.0 100,746 - AZOBR_RS30135 0.66 -2.3 100,746 - AZOBR_RS30135 0.66 +0.8 100,746 - AZOBR_RS30135 0.66 +0.9 100,746 - AZOBR_RS30135 0.66 +0.2 100,746 - AZOBR_RS30135 0.66 +0.5 100,746 - AZOBR_RS30135 0.66 -0.5 100,914 - AZOBR_RS30135 0.88 -1.2 100,914 - AZOBR_RS30135 0.88 +1.0 100,914 - AZOBR_RS30135 0.88 -1.9 101,074 - -1.1 101,284 - AZOBR_RS30140 0.15 -0.9 101,340 + AZOBR_RS30140 0.22 +1.7 101,460 + AZOBR_RS30140 0.36 +0.2 101,461 - AZOBR_RS30140 0.36 +0.1 101,527 - AZOBR_RS30140 0.43 +0.5 101,638 - AZOBR_RS30140 0.56 -4.0 101,739 + AZOBR_RS30140 0.67 +0.3 101,739 + AZOBR_RS30140 0.67 -0.4 101,950 - +0.8 102,148 + -1.2 102,216 - -0.5 102,380 + AZOBR_RS30145 0.24 -3.4 102,381 - AZOBR_RS30145 0.24 +0.6 102,381 - AZOBR_RS30145 0.24 +0.8 102,381 - AZOBR_RS30145 0.24 +0.5 102,381 - AZOBR_RS30145 0.24 -2.9 102,572 + AZOBR_RS30145 0.46 +2.0 102,572 + AZOBR_RS30145 0.46 +0.3 102,572 + AZOBR_RS30145 0.46 +1.0 102,572 + AZOBR_RS30145 0.46 -0.4 102,573 - AZOBR_RS30145 0.46 -1.8 102,611 + AZOBR_RS30145 0.50 +1.3 102,941 + AZOBR_RS30145 0.88 +0.0
Or see this region's nucleotide sequence