Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30130

Experiment: Sisomicin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30120 and AZOBR_RS30125 overlap by 10 nucleotidesAZOBR_RS30125 and AZOBR_RS30130 are separated by 115 nucleotidesAZOBR_RS30130 and AZOBR_RS30135 are separated by 457 nucleotides AZOBR_RS30120: AZOBR_RS30120 - C4-dicarboxylate ABC transporter permease, at 96,948 to 98,231 _RS30120 AZOBR_RS30125: AZOBR_RS30125 - C4-dicarboxylate ABC transporter permease, at 98,222 to 98,710 _RS30125 AZOBR_RS30130: AZOBR_RS30130 - C4-dicarboxylate ABC transporter, at 98,826 to 99,785 _RS30130 AZOBR_RS30135: AZOBR_RS30135 - GntR family transcriptional regulator, at 100,243 to 101,001 _RS30135 Position (kb) 98 99 100Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 97.832 kb on - strand, within AZOBR_RS30120at 97.843 kb on + strand, within AZOBR_RS30120at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.398 kb on - strand, within AZOBR_RS30125at 98.827 kb on + strandat 98.828 kb on - strandat 99.010 kb on + strand, within AZOBR_RS30130at 99.010 kb on + strand, within AZOBR_RS30130at 99.011 kb on - strand, within AZOBR_RS30130at 99.011 kb on - strand, within AZOBR_RS30130at 99.134 kb on - strand, within AZOBR_RS30130at 99.166 kb on + strand, within AZOBR_RS30130at 99.175 kb on + strand, within AZOBR_RS30130at 99.175 kb on + strand, within AZOBR_RS30130at 99.176 kb on - strand, within AZOBR_RS30130at 99.176 kb on - strand, within AZOBR_RS30130at 99.176 kb on - strand, within AZOBR_RS30130at 99.176 kb on - strand, within AZOBR_RS30130at 99.220 kb on + strand, within AZOBR_RS30130at 99.220 kb on + strand, within AZOBR_RS30130at 99.221 kb on - strand, within AZOBR_RS30130at 99.352 kb on + strand, within AZOBR_RS30130at 99.352 kb on + strand, within AZOBR_RS30130at 99.353 kb on - strand, within AZOBR_RS30130at 99.376 kb on + strand, within AZOBR_RS30130at 99.377 kb on - strand, within AZOBR_RS30130at 99.377 kb on - strand, within AZOBR_RS30130at 99.667 kb on + strand, within AZOBR_RS30130at 99.667 kb on + strand, within AZOBR_RS30130at 99.667 kb on + strand, within AZOBR_RS30130at 99.667 kb on + strand, within AZOBR_RS30130at 99.668 kb on - strand, within AZOBR_RS30130at 99.668 kb on - strand, within AZOBR_RS30130at 99.668 kb on - strand, within AZOBR_RS30130at 99.819 kb on + strandat 99.820 kb on - strandat 99.943 kb on - strandat 99.985 kb on + strandat 100.169 kb on - strandat 100.295 kb on + strandat 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.745 kb on + strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135at 100.746 kb on - strand, within AZOBR_RS30135

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
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97,832 - AZOBR_RS30120 0.69 -0.1
97,843 + AZOBR_RS30120 0.70 +0.4
98,358 + AZOBR_RS30125 0.28 -0.5
98,358 + AZOBR_RS30125 0.28 +1.2
98,358 + AZOBR_RS30125 0.28 +0.1
98,358 + AZOBR_RS30125 0.28 -0.5
98,358 + AZOBR_RS30125 0.28 -0.4
98,358 + AZOBR_RS30125 0.28 +0.3
98,358 + AZOBR_RS30125 0.28 +0.2
98,358 + AZOBR_RS30125 0.28 +0.5
98,398 - AZOBR_RS30125 0.36 +1.5
98,827 + -1.2
98,828 - -1.0
99,010 + AZOBR_RS30130 0.19 -2.0
99,010 + AZOBR_RS30130 0.19 -3.2
99,011 - AZOBR_RS30130 0.19 -0.0
99,011 - AZOBR_RS30130 0.19 -0.0
99,134 - AZOBR_RS30130 0.32 -1.2
99,166 + AZOBR_RS30130 0.35 -0.9
99,175 + AZOBR_RS30130 0.36 +0.6
99,175 + AZOBR_RS30130 0.36 -1.0
99,176 - AZOBR_RS30130 0.36 +2.5
99,176 - AZOBR_RS30130 0.36 +0.6
99,176 - AZOBR_RS30130 0.36 -3.0
99,176 - AZOBR_RS30130 0.36 -4.1
99,220 + AZOBR_RS30130 0.41 -1.0
99,220 + AZOBR_RS30130 0.41 -1.7
99,221 - AZOBR_RS30130 0.41 -1.9
99,352 + AZOBR_RS30130 0.55 +0.1
99,352 + AZOBR_RS30130 0.55 +0.5
99,353 - AZOBR_RS30130 0.55 -0.2
99,376 + AZOBR_RS30130 0.57 +1.1
99,377 - AZOBR_RS30130 0.57 -1.1
99,377 - AZOBR_RS30130 0.57 -4.0
99,667 + AZOBR_RS30130 0.88 +1.5
99,667 + AZOBR_RS30130 0.88 -1.7
99,667 + AZOBR_RS30130 0.88 -0.8
99,667 + AZOBR_RS30130 0.88 +2.4
99,668 - AZOBR_RS30130 0.88 -1.2
99,668 - AZOBR_RS30130 0.88 -0.4
99,668 - AZOBR_RS30130 0.88 -3.9
99,819 + -0.0
99,820 - -3.3
99,943 - +1.3
99,985 + -1.1
100,169 - -0.1
100,295 + -0.4
100,745 + AZOBR_RS30135 0.66 -0.5
100,745 + AZOBR_RS30135 0.66 +0.6
100,745 + AZOBR_RS30135 0.66 -1.0
100,745 + AZOBR_RS30135 0.66 -0.1
100,745 + AZOBR_RS30135 0.66 -0.3
100,745 + AZOBR_RS30135 0.66 -1.6
100,745 + AZOBR_RS30135 0.66 +0.6
100,745 + AZOBR_RS30135 0.66 -1.1
100,746 - AZOBR_RS30135 0.66 -3.5
100,746 - AZOBR_RS30135 0.66 -2.2
100,746 - AZOBR_RS30135 0.66 +0.3
100,746 - AZOBR_RS30135 0.66 -0.0
100,746 - AZOBR_RS30135 0.66 +1.0
100,746 - AZOBR_RS30135 0.66 -2.3
100,746 - AZOBR_RS30135 0.66 +0.8
100,746 - AZOBR_RS30135 0.66 +0.9
100,746 - AZOBR_RS30135 0.66 +0.2
100,746 - AZOBR_RS30135 0.66 +0.5
100,746 - AZOBR_RS30135 0.66 -0.5

Or see this region's nucleotide sequence