Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30120

Experiment: Sisomicin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30120 and AZOBR_RS30125 overlap by 10 nucleotidesAZOBR_RS30125 and AZOBR_RS30130 are separated by 115 nucleotides AZOBR_RS30120: AZOBR_RS30120 - C4-dicarboxylate ABC transporter permease, at 96,948 to 98,231 _RS30120 AZOBR_RS30125: AZOBR_RS30125 - C4-dicarboxylate ABC transporter permease, at 98,222 to 98,710 _RS30125 AZOBR_RS30130: AZOBR_RS30130 - C4-dicarboxylate ABC transporter, at 98,826 to 99,785 _RS30130 Position (kb) 96 97 98 99Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 96.067 kb on - strandat 96.067 kb on - strandat 96.067 kb on - strandat 96.165 kb on - strandat 96.165 kb on - strandat 96.247 kb on + strandat 96.247 kb on + strandat 96.247 kb on + strandat 96.248 kb on - strandat 96.309 kb on + strandat 96.309 kb on + strandat 96.994 kb on + strandat 96.994 kb on + strandat 96.995 kb on - strandat 96.995 kb on - strandat 96.995 kb on - strandat 96.995 kb on - strandat 97.030 kb on + strandat 97.030 kb on + strandat 97.030 kb on + strandat 97.030 kb on + strandat 97.030 kb on + strandat 97.031 kb on - strandat 97.031 kb on - strandat 97.346 kb on - strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.361 kb on - strand, within AZOBR_RS30120at 97.361 kb on - strand, within AZOBR_RS30120at 97.361 kb on - strand, within AZOBR_RS30120at 97.463 kb on - strand, within AZOBR_RS30120at 97.463 kb on - strand, within AZOBR_RS30120at 97.489 kb on + strand, within AZOBR_RS30120at 97.489 kb on + strand, within AZOBR_RS30120at 97.489 kb on + strand, within AZOBR_RS30120at 97.490 kb on - strand, within AZOBR_RS30120at 97.490 kb on - strand, within AZOBR_RS30120at 97.657 kb on + strand, within AZOBR_RS30120at 97.657 kb on + strand, within AZOBR_RS30120at 97.657 kb on + strand, within AZOBR_RS30120at 97.657 kb on + strand, within AZOBR_RS30120at 97.658 kb on - strand, within AZOBR_RS30120at 97.658 kb on - strand, within AZOBR_RS30120at 97.658 kb on - strand, within AZOBR_RS30120at 97.660 kb on + strand, within AZOBR_RS30120at 97.661 kb on - strand, within AZOBR_RS30120at 97.759 kb on + strand, within AZOBR_RS30120at 97.759 kb on + strand, within AZOBR_RS30120at 97.759 kb on + strand, within AZOBR_RS30120at 97.760 kb on - strand, within AZOBR_RS30120at 97.760 kb on - strand, within AZOBR_RS30120at 97.760 kb on - strand, within AZOBR_RS30120at 97.760 kb on - strand, within AZOBR_RS30120at 97.760 kb on - strand, within AZOBR_RS30120at 97.832 kb on - strand, within AZOBR_RS30120at 97.843 kb on + strand, within AZOBR_RS30120at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.398 kb on - strand, within AZOBR_RS30125at 98.827 kb on + strandat 98.828 kb on - strandat 99.010 kb on + strand, within AZOBR_RS30130at 99.010 kb on + strand, within AZOBR_RS30130at 99.011 kb on - strand, within AZOBR_RS30130at 99.011 kb on - strand, within AZOBR_RS30130at 99.134 kb on - strand, within AZOBR_RS30130at 99.166 kb on + strand, within AZOBR_RS30130at 99.175 kb on + strand, within AZOBR_RS30130at 99.175 kb on + strand, within AZOBR_RS30130at 99.176 kb on - strand, within AZOBR_RS30130at 99.176 kb on - strand, within AZOBR_RS30130at 99.176 kb on - strand, within AZOBR_RS30130at 99.176 kb on - strand, within AZOBR_RS30130at 99.220 kb on + strand, within AZOBR_RS30130at 99.220 kb on + strand, within AZOBR_RS30130at 99.221 kb on - strand, within AZOBR_RS30130

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
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96,067 - -0.6
96,067 - +0.2
96,067 - -0.1
96,165 - +0.0
96,165 - -0.2
96,247 + +0.4
96,247 + +1.2
96,247 + +0.5
96,248 - -4.4
96,309 + +0.1
96,309 + +0.7
96,994 + +0.8
96,994 + +1.1
96,995 - -2.2
96,995 - -0.0
96,995 - -4.0
96,995 - -2.3
97,030 + +0.4
97,030 + -1.0
97,030 + -0.0
97,030 + +0.5
97,030 + +2.5
97,031 - +0.6
97,031 - -2.5
97,346 - AZOBR_RS30120 0.31 +0.1
97,360 + AZOBR_RS30120 0.32 -0.1
97,360 + AZOBR_RS30120 0.32 +1.3
97,360 + AZOBR_RS30120 0.32 -0.2
97,360 + AZOBR_RS30120 0.32 +0.0
97,360 + AZOBR_RS30120 0.32 -1.4
97,360 + AZOBR_RS30120 0.32 +0.0
97,360 + AZOBR_RS30120 0.32 -0.4
97,360 + AZOBR_RS30120 0.32 -0.3
97,360 + AZOBR_RS30120 0.32 -1.2
97,361 - AZOBR_RS30120 0.32 +0.1
97,361 - AZOBR_RS30120 0.32 +1.6
97,361 - AZOBR_RS30120 0.32 +0.1
97,463 - AZOBR_RS30120 0.40 -4.5
97,463 - AZOBR_RS30120 0.40 +0.4
97,489 + AZOBR_RS30120 0.42 -0.8
97,489 + AZOBR_RS30120 0.42 -0.9
97,489 + AZOBR_RS30120 0.42 +0.9
97,490 - AZOBR_RS30120 0.42 +0.2
97,490 - AZOBR_RS30120 0.42 -1.7
97,657 + AZOBR_RS30120 0.55 +1.0
97,657 + AZOBR_RS30120 0.55 +0.9
97,657 + AZOBR_RS30120 0.55 -0.0
97,657 + AZOBR_RS30120 0.55 +1.7
97,658 - AZOBR_RS30120 0.55 -1.4
97,658 - AZOBR_RS30120 0.55 -1.1
97,658 - AZOBR_RS30120 0.55 -0.6
97,660 + AZOBR_RS30120 0.55 +1.0
97,661 - AZOBR_RS30120 0.56 -3.1
97,759 + AZOBR_RS30120 0.63 -1.5
97,759 + AZOBR_RS30120 0.63 +0.3
97,759 + AZOBR_RS30120 0.63 +0.7
97,760 - AZOBR_RS30120 0.63 +1.0
97,760 - AZOBR_RS30120 0.63 +0.4
97,760 - AZOBR_RS30120 0.63 -2.2
97,760 - AZOBR_RS30120 0.63 +1.1
97,760 - AZOBR_RS30120 0.63 +0.5
97,832 - AZOBR_RS30120 0.69 -0.1
97,843 + AZOBR_RS30120 0.70 +0.4
98,358 + AZOBR_RS30125 0.28 -0.5
98,358 + AZOBR_RS30125 0.28 +1.2
98,358 + AZOBR_RS30125 0.28 +0.1
98,358 + AZOBR_RS30125 0.28 -0.5
98,358 + AZOBR_RS30125 0.28 -0.4
98,358 + AZOBR_RS30125 0.28 +0.3
98,358 + AZOBR_RS30125 0.28 +0.2
98,358 + AZOBR_RS30125 0.28 +0.5
98,398 - AZOBR_RS30125 0.36 +1.5
98,827 + -1.2
98,828 - -1.0
99,010 + AZOBR_RS30130 0.19 -2.0
99,010 + AZOBR_RS30130 0.19 -3.2
99,011 - AZOBR_RS30130 0.19 -0.0
99,011 - AZOBR_RS30130 0.19 -0.0
99,134 - AZOBR_RS30130 0.32 -1.2
99,166 + AZOBR_RS30130 0.35 -0.9
99,175 + AZOBR_RS30130 0.36 +0.6
99,175 + AZOBR_RS30130 0.36 -1.0
99,176 - AZOBR_RS30130 0.36 +2.5
99,176 - AZOBR_RS30130 0.36 +0.6
99,176 - AZOBR_RS30130 0.36 -3.0
99,176 - AZOBR_RS30130 0.36 -4.1
99,220 + AZOBR_RS30130 0.41 -1.0
99,220 + AZOBR_RS30130 0.41 -1.7
99,221 - AZOBR_RS30130 0.41 -1.9

Or see this region's nucleotide sequence