Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29970 and AZOBR_RS29975 are separated by 30 nucleotides AZOBR_RS29975 and AZOBR_RS29980 are separated by 132 nucleotides AZOBR_RS29980 and AZOBR_RS29985 are separated by 30 nucleotides
AZOBR_RS29970: AZOBR_RS29970 - hypothetical protein, at 65,152 to 65,691
_RS29970
AZOBR_RS29975: AZOBR_RS29975 - AsnC family transcriptional regulator, at 65,722 to 66,150
_RS29975
AZOBR_RS29980: AZOBR_RS29980 - saccharopine dehydrogenase, at 66,283 to 67,410
_RS29980
AZOBR_RS29985: AZOBR_RS29985 - pyruvate oxidase, at 67,441 to 69,195
_RS29985
Position (kb) 66
67
68 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 65.362 kb on + strand, within AZOBR_RS29970 at 65.363 kb on - strand, within AZOBR_RS29970 at 65.401 kb on + strand, within AZOBR_RS29970 at 65.401 kb on + strand, within AZOBR_RS29970 at 66.766 kb on + strand, within AZOBR_RS29980 at 66.766 kb on + strand, within AZOBR_RS29980 at 66.766 kb on + strand, within AZOBR_RS29980 at 66.767 kb on - strand, within AZOBR_RS29980 at 66.898 kb on + strand, within AZOBR_RS29980 at 67.178 kb on - strand, within AZOBR_RS29980 at 67.204 kb on + strand, within AZOBR_RS29980 at 67.442 kb on + strand at 67.443 kb on - strand at 67.443 kb on - strand at 67.443 kb on - strand at 67.443 kb on - strand at 67.443 kb on - strand at 67.731 kb on - strand, within AZOBR_RS29985 at 67.731 kb on - strand, within AZOBR_RS29985 at 67.820 kb on + strand, within AZOBR_RS29985 at 67.820 kb on + strand, within AZOBR_RS29985 at 67.820 kb on + strand, within AZOBR_RS29985 at 67.877 kb on + strand, within AZOBR_RS29985 at 68.330 kb on + strand, within AZOBR_RS29985 at 68.330 kb on + strand, within AZOBR_RS29985 at 68.331 kb on - strand, within AZOBR_RS29985 at 68.339 kb on + strand, within AZOBR_RS29985 at 68.339 kb on + strand, within AZOBR_RS29985 at 68.339 kb on + strand, within AZOBR_RS29985 at 68.339 kb on + strand, within AZOBR_RS29985 at 68.340 kb on - strand, within AZOBR_RS29985
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 65,362 + AZOBR_RS29970 0.39 -0.5 65,363 - AZOBR_RS29970 0.39 -0.7 65,401 + AZOBR_RS29970 0.46 +0.3 65,401 + AZOBR_RS29970 0.46 -0.3 66,766 + AZOBR_RS29980 0.43 -1.2 66,766 + AZOBR_RS29980 0.43 +0.1 66,766 + AZOBR_RS29980 0.43 -2.7 66,767 - AZOBR_RS29980 0.43 +0.6 66,898 + AZOBR_RS29980 0.55 -0.3 67,178 - AZOBR_RS29980 0.79 +1.1 67,204 + AZOBR_RS29980 0.82 -2.6 67,442 + +2.0 67,443 - -3.8 67,443 - -3.6 67,443 - -3.3 67,443 - -3.5 67,443 - +0.9 67,731 - AZOBR_RS29985 0.17 +1.2 67,731 - AZOBR_RS29985 0.17 +1.1 67,820 + AZOBR_RS29985 0.22 -3.5 67,820 + AZOBR_RS29985 0.22 -0.6 67,820 + AZOBR_RS29985 0.22 -0.3 67,877 + AZOBR_RS29985 0.25 +1.0 68,330 + AZOBR_RS29985 0.51 -0.9 68,330 + AZOBR_RS29985 0.51 +0.0 68,331 - AZOBR_RS29985 0.51 +0.8 68,339 + AZOBR_RS29985 0.51 +0.2 68,339 + AZOBR_RS29985 0.51 -2.2 68,339 + AZOBR_RS29985 0.51 -0.1 68,339 + AZOBR_RS29985 0.51 +0.2 68,340 - AZOBR_RS29985 0.51 +1.7
Or see this region's nucleotide sequence