Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29840 and AZOBR_RS29845 are separated by 287 nucleotides AZOBR_RS29845 and AZOBR_RS29850 are separated by 5 nucleotides AZOBR_RS29850 and AZOBR_RS29855 overlap by 4 nucleotides
AZOBR_RS29840: AZOBR_RS29840 - sulfoxide reductase catalytic subunit YedY, at 41,845 to 42,792
_RS29840
AZOBR_RS29845: AZOBR_RS29845 - oxidoreductase, at 43,080 to 44,108
_RS29845
AZOBR_RS29850: AZOBR_RS29850 - ketohydroxyglutarate aldolase, at 44,114 to 44,749
_RS29850
AZOBR_RS29855: AZOBR_RS29855 - GntR family transcriptional regulator, at 44,746 to 45,513
_RS29855
Position (kb) 43
44
45 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 42.102 kb on - strand, within AZOBR_RS29840 at 42.102 kb on - strand, within AZOBR_RS29840 at 42.161 kb on + strand, within AZOBR_RS29840 at 42.161 kb on + strand, within AZOBR_RS29840 at 42.161 kb on + strand, within AZOBR_RS29840 at 42.161 kb on + strand, within AZOBR_RS29840 at 42.161 kb on + strand, within AZOBR_RS29840 at 42.296 kb on + strand, within AZOBR_RS29840 at 42.296 kb on + strand, within AZOBR_RS29840 at 42.296 kb on + strand, within AZOBR_RS29840 at 42.297 kb on - strand, within AZOBR_RS29840 at 42.297 kb on - strand, within AZOBR_RS29840 at 42.297 kb on - strand, within AZOBR_RS29840 at 42.399 kb on - strand, within AZOBR_RS29840 at 42.848 kb on + strand at 42.848 kb on + strand at 42.849 kb on - strand at 42.849 kb on - strand at 43.072 kb on + strand at 43.072 kb on + strand at 43.072 kb on + strand at 43.072 kb on + strand at 43.073 kb on - strand at 43.073 kb on - strand at 43.546 kb on + strand, within AZOBR_RS29845 at 43.546 kb on + strand, within AZOBR_RS29845 at 43.547 kb on - strand, within AZOBR_RS29845 at 43.547 kb on - strand, within AZOBR_RS29845 at 43.547 kb on - strand, within AZOBR_RS29845 at 43.547 kb on - strand, within AZOBR_RS29845 at 43.627 kb on + strand, within AZOBR_RS29845 at 43.627 kb on + strand, within AZOBR_RS29845 at 43.628 kb on - strand, within AZOBR_RS29845 at 43.628 kb on - strand, within AZOBR_RS29845 at 43.630 kb on + strand, within AZOBR_RS29845 at 43.630 kb on + strand, within AZOBR_RS29845 at 43.631 kb on - strand, within AZOBR_RS29845 at 43.631 kb on - strand, within AZOBR_RS29845 at 43.631 kb on - strand, within AZOBR_RS29845 at 44.115 kb on + strand at 44.115 kb on + strand at 44.425 kb on - strand, within AZOBR_RS29850 at 44.774 kb on + strand at 44.774 kb on + strand at 44.774 kb on + strand at 44.775 kb on - strand at 44.775 kb on - strand at 44.775 kb on - strand at 44.775 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 42,102 - AZOBR_RS29840 0.27 +0.4 42,102 - AZOBR_RS29840 0.27 -3.9 42,161 + AZOBR_RS29840 0.33 +0.6 42,161 + AZOBR_RS29840 0.33 +1.1 42,161 + AZOBR_RS29840 0.33 +0.1 42,161 + AZOBR_RS29840 0.33 -0.2 42,161 + AZOBR_RS29840 0.33 -0.7 42,296 + AZOBR_RS29840 0.48 +1.5 42,296 + AZOBR_RS29840 0.48 -4.9 42,296 + AZOBR_RS29840 0.48 +0.9 42,297 - AZOBR_RS29840 0.48 -0.9 42,297 - AZOBR_RS29840 0.48 +1.5 42,297 - AZOBR_RS29840 0.48 +0.7 42,399 - AZOBR_RS29840 0.58 +0.5 42,848 + -0.4 42,848 + -2.0 42,849 - -1.3 42,849 - -0.0 43,072 + +0.5 43,072 + -1.3 43,072 + -0.2 43,072 + +0.7 43,073 - +0.2 43,073 - -0.5 43,546 + AZOBR_RS29845 0.45 +0.4 43,546 + AZOBR_RS29845 0.45 +1.3 43,547 - AZOBR_RS29845 0.45 -0.7 43,547 - AZOBR_RS29845 0.45 +0.3 43,547 - AZOBR_RS29845 0.45 +0.7 43,547 - AZOBR_RS29845 0.45 +0.6 43,627 + AZOBR_RS29845 0.53 -0.2 43,627 + AZOBR_RS29845 0.53 +0.3 43,628 - AZOBR_RS29845 0.53 -0.7 43,628 - AZOBR_RS29845 0.53 -0.6 43,630 + AZOBR_RS29845 0.53 +0.1 43,630 + AZOBR_RS29845 0.53 +0.6 43,631 - AZOBR_RS29845 0.54 -0.5 43,631 - AZOBR_RS29845 0.54 +0.6 43,631 - AZOBR_RS29845 0.54 -1.6 44,115 + +0.7 44,115 + -0.5 44,425 - AZOBR_RS29850 0.49 -0.2 44,774 + -1.7 44,774 + +0.1 44,774 + -3.0 44,775 - -0.8 44,775 - +0.0 44,775 - -1.3 44,775 - -3.3
Or see this region's nucleotide sequence