Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29810 and AZOBR_RS29815 are separated by 97 nucleotides AZOBR_RS29815 and AZOBR_RS29820 are separated by 339 nucleotides
AZOBR_RS29810: AZOBR_RS29810 - phosphoribosylglycinamide formyltransferase, at 36,263 to 37,432
_RS29810
AZOBR_RS29815: AZOBR_RS29815 - conserved exported protein of unknown function, at 37,530 to 38,027
_RS29815
AZOBR_RS29820: AZOBR_RS29820 - ABC transporter substrate-binding protein, at 38,367 to 39,398
_RS29820
Position (kb) 37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 36.772 kb on - strand, within AZOBR_RS29810 at 36.921 kb on + strand, within AZOBR_RS29810 at 36.921 kb on + strand, within AZOBR_RS29810 at 36.922 kb on - strand, within AZOBR_RS29810 at 36.922 kb on - strand, within AZOBR_RS29810 at 37.065 kb on + strand, within AZOBR_RS29810 at 37.330 kb on - strand at 37.330 kb on - strand at 37.330 kb on - strand at 37.415 kb on + strand at 37.490 kb on + strand at 37.490 kb on + strand at 37.490 kb on + strand at 37.491 kb on - strand at 37.491 kb on - strand at 37.491 kb on - strand at 37.510 kb on + strand at 37.511 kb on - strand at 37.511 kb on - strand at 37.511 kb on - strand at 37.511 kb on - strand at 37.532 kb on - strand at 37.849 kb on + strand, within AZOBR_RS29815 at 37.849 kb on + strand, within AZOBR_RS29815 at 37.849 kb on + strand, within AZOBR_RS29815 at 38.067 kb on - strand at 38.136 kb on + strand at 38.137 kb on - strand at 38.184 kb on + strand at 38.248 kb on - strand at 38.248 kb on - strand at 38.360 kb on + strand at 38.360 kb on + strand at 38.360 kb on + strand at 38.360 kb on + strand at 38.361 kb on - strand at 38.361 kb on - strand at 38.361 kb on - strand at 38.361 kb on - strand at 38.361 kb on - strand at 38.361 kb on - strand at 38.520 kb on + strand, within AZOBR_RS29820 at 38.520 kb on + strand, within AZOBR_RS29820 at 38.521 kb on - strand, within AZOBR_RS29820 at 38.521 kb on - strand, within AZOBR_RS29820 at 38.521 kb on - strand, within AZOBR_RS29820 at 38.521 kb on - strand, within AZOBR_RS29820 at 38.521 kb on - strand, within AZOBR_RS29820 at 38.931 kb on + strand, within AZOBR_RS29820 at 38.931 kb on + strand, within AZOBR_RS29820 at 38.931 kb on + strand, within AZOBR_RS29820 at 38.932 kb on - strand, within AZOBR_RS29820 at 38.932 kb on - strand, within AZOBR_RS29820
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 36,772 - AZOBR_RS29810 0.44 -2.7 36,921 + AZOBR_RS29810 0.56 -0.6 36,921 + AZOBR_RS29810 0.56 +0.1 36,922 - AZOBR_RS29810 0.56 -1.3 36,922 - AZOBR_RS29810 0.56 -0.4 37,065 + AZOBR_RS29810 0.69 -0.5 37,330 - -1.6 37,330 - -2.2 37,330 - -0.8 37,415 + +0.7 37,490 + +0.8 37,490 + -0.3 37,490 + -3.5 37,491 - -1.2 37,491 - -2.5 37,491 - -3.3 37,510 + +0.5 37,511 - -1.1 37,511 - -3.0 37,511 - -0.3 37,511 - -0.1 37,532 - -0.4 37,849 + AZOBR_RS29815 0.64 +0.4 37,849 + AZOBR_RS29815 0.64 +0.2 37,849 + AZOBR_RS29815 0.64 +0.5 38,067 - -0.1 38,136 + +0.8 38,137 - +0.4 38,184 + +1.6 38,248 - -0.8 38,248 - +1.4 38,360 + -0.3 38,360 + -0.3 38,360 + -0.5 38,360 + -2.2 38,361 - +1.3 38,361 - +0.6 38,361 - -0.2 38,361 - -3.5 38,361 - +0.3 38,361 - -1.5 38,520 + AZOBR_RS29820 0.15 -3.5 38,520 + AZOBR_RS29820 0.15 -0.5 38,521 - AZOBR_RS29820 0.15 -1.5 38,521 - AZOBR_RS29820 0.15 -0.6 38,521 - AZOBR_RS29820 0.15 +0.5 38,521 - AZOBR_RS29820 0.15 -1.1 38,521 - AZOBR_RS29820 0.15 -0.1 38,931 + AZOBR_RS29820 0.55 -0.5 38,931 + AZOBR_RS29820 0.55 +0.7 38,931 + AZOBR_RS29820 0.55 -0.9 38,932 - AZOBR_RS29820 0.55 -2.5 38,932 - AZOBR_RS29820 0.55 -1.2
Or see this region's nucleotide sequence