Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29550 and AZOBR_RS29555 overlap by 4 nucleotides AZOBR_RS29555 and AZOBR_RS29560 are separated by 117 nucleotides AZOBR_RS29560 and AZOBR_RS29565 overlap by 4 nucleotides
AZOBR_RS29550: AZOBR_RS29550 - isochorismate synthase dhbC, at 753,947 to 755,152
_RS29550
AZOBR_RS29555: AZOBR_RS29555 - enterobactin synthase subunit E, at 755,149 to 756,780
_RS29555
AZOBR_RS29560: AZOBR_RS29560 - isochorismatase, at 756,898 to 757,773
_RS29560
AZOBR_RS29565: AZOBR_RS29565 - 2 3-dihydroxybenzoate-2 3-dehydrogenase, at 757,770 to 758,522
_RS29565
Position (kb) 755
756
757 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 754.233 kb on - strand, within AZOBR_RS29550 at 754.374 kb on + strand, within AZOBR_RS29550 at 754.374 kb on + strand, within AZOBR_RS29550 at 754.375 kb on - strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.464 kb on - strand, within AZOBR_RS29550 at 754.464 kb on - strand, within AZOBR_RS29550 at 754.487 kb on + strand, within AZOBR_RS29550 at 754.658 kb on + strand, within AZOBR_RS29550 at 754.911 kb on - strand, within AZOBR_RS29550 at 755.007 kb on - strand, within AZOBR_RS29550 at 755.325 kb on - strand, within AZOBR_RS29555 at 755.779 kb on + strand, within AZOBR_RS29555 at 755.780 kb on - strand, within AZOBR_RS29555 at 755.780 kb on - strand, within AZOBR_RS29555 at 755.780 kb on - strand, within AZOBR_RS29555 at 755.780 kb on - strand, within AZOBR_RS29555 at 756.166 kb on + strand, within AZOBR_RS29555 at 756.166 kb on + strand, within AZOBR_RS29555 at 756.166 kb on + strand, within AZOBR_RS29555 at 756.311 kb on - strand, within AZOBR_RS29555 at 756.325 kb on + strand, within AZOBR_RS29555 at 756.328 kb on + strand, within AZOBR_RS29555 at 756.329 kb on - strand, within AZOBR_RS29555 at 756.329 kb on - strand, within AZOBR_RS29555 at 756.922 kb on + strand at 756.923 kb on - strand at 756.923 kb on - strand at 757.018 kb on + strand, within AZOBR_RS29560 at 757.018 kb on + strand, within AZOBR_RS29560 at 757.019 kb on - strand, within AZOBR_RS29560 at 757.019 kb on - strand, within AZOBR_RS29560 at 757.033 kb on + strand, within AZOBR_RS29560 at 757.034 kb on - strand, within AZOBR_RS29560 at 757.123 kb on + strand, within AZOBR_RS29560 at 757.351 kb on + strand, within AZOBR_RS29560 at 757.472 kb on - strand, within AZOBR_RS29560
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 754,233 - AZOBR_RS29550 0.24 -2.7 754,374 + AZOBR_RS29550 0.35 +0.4 754,374 + AZOBR_RS29550 0.35 +0.3 754,375 - AZOBR_RS29550 0.35 +0.8 754,463 + AZOBR_RS29550 0.43 +0.6 754,463 + AZOBR_RS29550 0.43 +2.3 754,463 + AZOBR_RS29550 0.43 +1.7 754,464 - AZOBR_RS29550 0.43 +0.2 754,464 - AZOBR_RS29550 0.43 +1.1 754,487 + AZOBR_RS29550 0.45 -0.1 754,658 + AZOBR_RS29550 0.59 -1.3 754,911 - AZOBR_RS29550 0.80 -0.5 755,007 - AZOBR_RS29550 0.88 -3.9 755,325 - AZOBR_RS29555 0.11 +1.4 755,779 + AZOBR_RS29555 0.39 -1.6 755,780 - AZOBR_RS29555 0.39 -1.3 755,780 - AZOBR_RS29555 0.39 +0.4 755,780 - AZOBR_RS29555 0.39 -2.8 755,780 - AZOBR_RS29555 0.39 -1.3 756,166 + AZOBR_RS29555 0.62 -0.7 756,166 + AZOBR_RS29555 0.62 -1.3 756,166 + AZOBR_RS29555 0.62 -0.1 756,311 - AZOBR_RS29555 0.71 +0.5 756,325 + AZOBR_RS29555 0.72 +0.1 756,328 + AZOBR_RS29555 0.72 -3.2 756,329 - AZOBR_RS29555 0.72 -2.0 756,329 - AZOBR_RS29555 0.72 +1.7 756,922 + +0.7 756,923 - -0.4 756,923 - -3.3 757,018 + AZOBR_RS29560 0.14 +1.5 757,018 + AZOBR_RS29560 0.14 +0.1 757,019 - AZOBR_RS29560 0.14 -0.1 757,019 - AZOBR_RS29560 0.14 -0.2 757,033 + AZOBR_RS29560 0.15 -0.2 757,034 - AZOBR_RS29560 0.16 +1.9 757,123 + AZOBR_RS29560 0.26 +0.8 757,351 + AZOBR_RS29560 0.52 +0.4 757,472 - AZOBR_RS29560 0.66 -2.7
Or see this region's nucleotide sequence