Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS29430

Experiment: Sisomicin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS29425 and AZOBR_RS29430 are separated by 16 nucleotidesAZOBR_RS29430 and AZOBR_RS29435 overlap by 4 nucleotides AZOBR_RS29425: AZOBR_RS29425 - hypothetical protein, at 722,570 to 723,424 _RS29425 AZOBR_RS29430: AZOBR_RS29430 - hemin ABC transporter substrate-binding protein, at 723,441 to 724,316 _RS29430 AZOBR_RS29435: AZOBR_RS29435 - hemin ABC transporter permease, at 724,313 to 725,422 _RS29435 Position (kb) 723 724 725Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 723.305 kb on + strand, within AZOBR_RS29425at 723.306 kb on - strand, within AZOBR_RS29425at 723.306 kb on - strand, within AZOBR_RS29425at 723.651 kb on + strand, within AZOBR_RS29430at 723.651 kb on + strand, within AZOBR_RS29430at 723.651 kb on + strand, within AZOBR_RS29430at 723.652 kb on - strand, within AZOBR_RS29430at 724.062 kb on + strand, within AZOBR_RS29430at 724.062 kb on + strand, within AZOBR_RS29430at 724.062 kb on + strand, within AZOBR_RS29430at 724.063 kb on - strand, within AZOBR_RS29430at 724.887 kb on + strand, within AZOBR_RS29435at 724.916 kb on + strand, within AZOBR_RS29435at 724.917 kb on - strand, within AZOBR_RS29435at 724.917 kb on - strand, within AZOBR_RS29435at 724.917 kb on - strand, within AZOBR_RS29435

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
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723,305 + AZOBR_RS29425 0.86 +0.6
723,306 - AZOBR_RS29425 0.86 -1.2
723,306 - AZOBR_RS29425 0.86 +0.6
723,651 + AZOBR_RS29430 0.24 -1.8
723,651 + AZOBR_RS29430 0.24 +1.8
723,651 + AZOBR_RS29430 0.24 -0.8
723,652 - AZOBR_RS29430 0.24 -0.4
724,062 + AZOBR_RS29430 0.71 -2.4
724,062 + AZOBR_RS29430 0.71 -3.4
724,062 + AZOBR_RS29430 0.71 -4.0
724,063 - AZOBR_RS29430 0.71 -0.2
724,887 + AZOBR_RS29435 0.52 -0.4
724,916 + AZOBR_RS29435 0.54 +0.4
724,917 - AZOBR_RS29435 0.54 -0.2
724,917 - AZOBR_RS29435 0.54 -0.1
724,917 - AZOBR_RS29435 0.54 +0.2

Or see this region's nucleotide sequence