Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29150 and AZOBR_RS29155 are separated by 239 nucleotides AZOBR_RS29155 and AZOBR_RS29160 are separated by 149 nucleotides
AZOBR_RS29150: AZOBR_RS29150 - TonB-denpendent receptor, at 662,929 to 665,322
_RS29150
AZOBR_RS29155: AZOBR_RS29155 - hypothetical protein, at 665,562 to 666,539
_RS29155
AZOBR_RS29160: AZOBR_RS29160 - putative RNA polymerase sigma-70 factor ECF subfamily, at 666,689 to 667,213
_RS29160
Position (kb) 665
666
667 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 664.682 kb on + strand, within AZOBR_RS29150 at 664.682 kb on + strand, within AZOBR_RS29150 at 664.844 kb on + strand, within AZOBR_RS29150 at 664.845 kb on - strand, within AZOBR_RS29150 at 665.582 kb on - strand at 665.582 kb on - strand at 665.582 kb on - strand at 665.670 kb on + strand, within AZOBR_RS29155 at 665.670 kb on + strand, within AZOBR_RS29155 at 666.275 kb on + strand, within AZOBR_RS29155 at 666.276 kb on - strand, within AZOBR_RS29155 at 666.276 kb on - strand, within AZOBR_RS29155 at 666.626 kb on + strand at 666.712 kb on + strand at 666.712 kb on + strand at 666.712 kb on + strand at 666.713 kb on - strand at 666.713 kb on - strand at 666.750 kb on + strand, within AZOBR_RS29160 at 666.750 kb on + strand, within AZOBR_RS29160 at 666.750 kb on + strand, within AZOBR_RS29160 at 666.751 kb on - strand, within AZOBR_RS29160 at 666.751 kb on - strand, within AZOBR_RS29160 at 666.819 kb on + strand, within AZOBR_RS29160 at 666.819 kb on + strand, within AZOBR_RS29160 at 666.819 kb on + strand, within AZOBR_RS29160 at 666.820 kb on - strand, within AZOBR_RS29160 at 666.820 kb on - strand, within AZOBR_RS29160 at 667.020 kb on + strand, within AZOBR_RS29160 at 667.020 kb on + strand, within AZOBR_RS29160 at 667.020 kb on + strand, within AZOBR_RS29160 at 667.020 kb on + strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.021 kb on - strand, within AZOBR_RS29160 at 667.377 kb on + strand at 667.396 kb on + strand at 667.454 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 664,682 + AZOBR_RS29150 0.73 +0.3 664,682 + AZOBR_RS29150 0.73 +1.4 664,844 + AZOBR_RS29150 0.80 -0.7 664,845 - AZOBR_RS29150 0.80 +0.8 665,582 - -0.4 665,582 - -4.1 665,582 - +0.7 665,670 + AZOBR_RS29155 0.11 -0.7 665,670 + AZOBR_RS29155 0.11 +0.0 666,275 + AZOBR_RS29155 0.73 +0.2 666,276 - AZOBR_RS29155 0.73 -2.4 666,276 - AZOBR_RS29155 0.73 -3.8 666,626 + -2.1 666,712 + -0.4 666,712 + +1.1 666,712 + -0.4 666,713 - +0.0 666,713 - +1.2 666,750 + AZOBR_RS29160 0.12 +0.9 666,750 + AZOBR_RS29160 0.12 -0.0 666,750 + AZOBR_RS29160 0.12 -0.2 666,751 - AZOBR_RS29160 0.12 +1.7 666,751 - AZOBR_RS29160 0.12 -0.5 666,819 + AZOBR_RS29160 0.25 -1.9 666,819 + AZOBR_RS29160 0.25 +1.0 666,819 + AZOBR_RS29160 0.25 +1.0 666,820 - AZOBR_RS29160 0.25 +0.5 666,820 - AZOBR_RS29160 0.25 -3.6 667,020 + AZOBR_RS29160 0.63 +1.6 667,020 + AZOBR_RS29160 0.63 +0.3 667,020 + AZOBR_RS29160 0.63 -1.0 667,020 + AZOBR_RS29160 0.63 -1.1 667,021 - AZOBR_RS29160 0.63 -2.8 667,021 - AZOBR_RS29160 0.63 -1.8 667,021 - AZOBR_RS29160 0.63 -0.8 667,021 - AZOBR_RS29160 0.63 -0.0 667,021 - AZOBR_RS29160 0.63 +1.2 667,021 - AZOBR_RS29160 0.63 -0.7 667,021 - AZOBR_RS29160 0.63 -0.3 667,377 + -0.8 667,396 + -1.2 667,454 + +0.4
Or see this region's nucleotide sequence