Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28695 and AZOBR_RS28700 are separated by 9 nucleotides AZOBR_RS28700 and AZOBR_RS28705 are separated by 295 nucleotides AZOBR_RS28705 and AZOBR_RS28710 overlap by 4 nucleotides AZOBR_RS28710 and AZOBR_RS28715 are separated by 3 nucleotides
AZOBR_RS28695: AZOBR_RS28695 - hypothetical protein, at 604,611 to 605,465
_RS28695
AZOBR_RS28700: AZOBR_RS28700 - hypothetical protein, at 605,475 to 606,137
_RS28700
AZOBR_RS28705: AZOBR_RS28705 - putative bacteriophage protein, at 606,433 to 607,686
_RS28705
AZOBR_RS28710: AZOBR_RS28710 - hypothetical protein, at 607,683 to 608,054
_RS28710
AZOBR_RS28715: AZOBR_RS28715 - hypothetical protein, at 608,058 to 608,789
_RS28715
Position (kb) 606
607
608 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 605.552 kb on - strand at 605.581 kb on + strand, within AZOBR_RS28700 at 605.620 kb on + strand, within AZOBR_RS28700 at 605.621 kb on - strand, within AZOBR_RS28700 at 605.719 kb on + strand, within AZOBR_RS28700 at 605.918 kb on - strand, within AZOBR_RS28700 at 606.088 kb on - strand at 606.127 kb on + strand at 606.127 kb on + strand at 606.127 kb on + strand at 606.128 kb on - strand at 606.128 kb on - strand at 606.173 kb on - strand at 606.173 kb on - strand at 606.173 kb on - strand at 606.328 kb on + strand at 606.328 kb on + strand at 606.329 kb on - strand at 606.329 kb on - strand at 606.329 kb on - strand at 606.329 kb on - strand at 606.329 kb on - strand at 606.350 kb on - strand at 606.350 kb on - strand at 606.554 kb on + strand at 606.669 kb on - strand, within AZOBR_RS28705 at 606.669 kb on - strand, within AZOBR_RS28705 at 606.669 kb on - strand, within AZOBR_RS28705 at 606.728 kb on + strand, within AZOBR_RS28705 at 606.749 kb on + strand, within AZOBR_RS28705 at 606.782 kb on + strand, within AZOBR_RS28705 at 606.782 kb on + strand, within AZOBR_RS28705 at 606.866 kb on + strand, within AZOBR_RS28705 at 607.044 kb on - strand, within AZOBR_RS28705 at 607.044 kb on - strand, within AZOBR_RS28705 at 607.427 kb on + strand, within AZOBR_RS28705 at 607.428 kb on - strand, within AZOBR_RS28705 at 607.428 kb on - strand, within AZOBR_RS28705 at 607.428 kb on - strand, within AZOBR_RS28705 at 607.428 kb on - strand, within AZOBR_RS28705 at 607.472 kb on + strand, within AZOBR_RS28705 at 607.472 kb on + strand, within AZOBR_RS28705 at 607.472 kb on + strand, within AZOBR_RS28705 at 607.473 kb on - strand, within AZOBR_RS28705 at 607.559 kb on + strand, within AZOBR_RS28705 at 607.559 kb on + strand, within AZOBR_RS28705 at 607.607 kb on + strand at 607.607 kb on + strand at 607.607 kb on + strand at 607.607 kb on + strand at 607.607 kb on + strand at 607.608 kb on - strand at 607.608 kb on - strand at 607.608 kb on - strand at 607.608 kb on - strand at 607.619 kb on + strand at 607.619 kb on + strand at 607.619 kb on + strand at 607.619 kb on + strand at 607.620 kb on - strand at 607.620 kb on - strand at 607.676 kb on + strand at 607.676 kb on + strand at 607.677 kb on - strand at 607.677 kb on - strand at 607.855 kb on + strand, within AZOBR_RS28710 at 608.177 kb on - strand, within AZOBR_RS28715 at 608.324 kb on - strand, within AZOBR_RS28715 at 608.324 kb on - strand, within AZOBR_RS28715 at 608.324 kb on - strand, within AZOBR_RS28715 at 608.324 kb on - strand, within AZOBR_RS28715 at 608.324 kb on - strand, within AZOBR_RS28715
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 605,552 - +0.4 605,581 + AZOBR_RS28700 0.16 +0.2 605,620 + AZOBR_RS28700 0.22 -0.4 605,621 - AZOBR_RS28700 0.22 -2.1 605,719 + AZOBR_RS28700 0.37 -1.6 605,918 - AZOBR_RS28700 0.67 +1.8 606,088 - +0.6 606,127 + -1.0 606,127 + -0.8 606,127 + +1.3 606,128 - -1.8 606,128 - +0.9 606,173 - -1.4 606,173 - -0.6 606,173 - +1.0 606,328 + -1.0 606,328 + -0.2 606,329 - -0.2 606,329 - +0.5 606,329 - +0.1 606,329 - +1.1 606,329 - -0.4 606,350 - +0.3 606,350 - -1.0 606,554 + -5.0 606,669 - AZOBR_RS28705 0.19 +2.1 606,669 - AZOBR_RS28705 0.19 -2.2 606,669 - AZOBR_RS28705 0.19 -0.2 606,728 + AZOBR_RS28705 0.24 -2.9 606,749 + AZOBR_RS28705 0.25 -1.9 606,782 + AZOBR_RS28705 0.28 -1.4 606,782 + AZOBR_RS28705 0.28 -4.7 606,866 + AZOBR_RS28705 0.35 -1.2 607,044 - AZOBR_RS28705 0.49 +1.0 607,044 - AZOBR_RS28705 0.49 +0.7 607,427 + AZOBR_RS28705 0.79 -1.4 607,428 - AZOBR_RS28705 0.79 -1.2 607,428 - AZOBR_RS28705 0.79 -0.1 607,428 - AZOBR_RS28705 0.79 -0.4 607,428 - AZOBR_RS28705 0.79 -3.1 607,472 + AZOBR_RS28705 0.83 -1.2 607,472 + AZOBR_RS28705 0.83 -0.2 607,472 + AZOBR_RS28705 0.83 +0.3 607,473 - AZOBR_RS28705 0.83 -1.8 607,559 + AZOBR_RS28705 0.90 -0.1 607,559 + AZOBR_RS28705 0.90 +0.8 607,607 + -0.7 607,607 + -2.5 607,607 + -0.7 607,607 + -2.3 607,607 + +0.7 607,608 - +0.5 607,608 - -0.3 607,608 - +0.3 607,608 - +0.5 607,619 + -2.0 607,619 + +1.4 607,619 + +1.1 607,619 + +0.4 607,620 - -0.2 607,620 - -2.1 607,676 + -4.0 607,676 + +1.2 607,677 - -1.5 607,677 - +0.3 607,855 + AZOBR_RS28710 0.46 -0.4 608,177 - AZOBR_RS28715 0.16 +0.9 608,324 - AZOBR_RS28715 0.36 +0.7 608,324 - AZOBR_RS28715 0.36 +1.1 608,324 - AZOBR_RS28715 0.36 -0.4 608,324 - AZOBR_RS28715 0.36 -2.3 608,324 - AZOBR_RS28715 0.36 -0.4
Or see this region's nucleotide sequence