Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28615 and AZOBR_RS28620 are separated by 278 nucleotides AZOBR_RS28620 and AZOBR_RS28625 overlap by 4 nucleotides AZOBR_RS28625 and AZOBR_RS28630 are separated by 6 nucleotides AZOBR_RS28630 and AZOBR_RS28635 overlap by 4 nucleotides AZOBR_RS28635 and AZOBR_RS28640 are separated by 209 nucleotides
AZOBR_RS28615: AZOBR_RS28615 - hypothetical protein, at 594,349 to 594,717
_RS28615
AZOBR_RS28620: AZOBR_RS28620 - hypothetical protein, at 594,996 to 595,298
_RS28620
AZOBR_RS28625: AZOBR_RS28625 - hypothetical protein, at 595,295 to 595,534
_RS28625
AZOBR_RS28630: AZOBR_RS28630 - hypothetical protein, at 595,541 to 595,846
_RS28630
AZOBR_RS28635: AZOBR_RS28635 - hypothetical protein, at 595,843 to 596,118
_RS28635
AZOBR_RS28640: AZOBR_RS28640 - hypothetical protein, at 596,328 to 596,585
_RS28640
Position (kb) 595
596 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 594.351 kb on - strand at 594.608 kb on + strand, within AZOBR_RS28615 at 594.609 kb on - strand, within AZOBR_RS28615 at 594.609 kb on - strand, within AZOBR_RS28615 at 595.223 kb on + strand, within AZOBR_RS28620 at 595.224 kb on - strand, within AZOBR_RS28620 at 595.239 kb on + strand, within AZOBR_RS28620 at 595.301 kb on + strand at 595.301 kb on + strand at 595.301 kb on + strand at 595.301 kb on + strand at 595.301 kb on + strand at 595.301 kb on + strand at 595.301 kb on + strand at 595.302 kb on - strand at 595.302 kb on - strand at 595.302 kb on - strand at 595.312 kb on + strand at 595.313 kb on - strand at 595.500 kb on + strand, within AZOBR_RS28625 at 595.803 kb on + strand, within AZOBR_RS28630 at 595.803 kb on + strand, within AZOBR_RS28630 at 595.804 kb on - strand, within AZOBR_RS28630 at 595.804 kb on - strand, within AZOBR_RS28630 at 595.911 kb on - strand, within AZOBR_RS28635 at 595.911 kb on - strand, within AZOBR_RS28635 at 596.045 kb on + strand, within AZOBR_RS28635 at 596.045 kb on + strand, within AZOBR_RS28635 at 596.045 kb on + strand, within AZOBR_RS28635 at 596.046 kb on - strand, within AZOBR_RS28635 at 596.195 kb on + strand at 596.303 kb on + strand at 596.303 kb on + strand at 596.303 kb on + strand at 596.303 kb on + strand at 596.304 kb on - strand at 596.304 kb on - strand at 596.304 kb on - strand at 596.304 kb on - strand at 596.304 kb on - strand at 596.428 kb on + strand, within AZOBR_RS28640 at 596.428 kb on + strand, within AZOBR_RS28640 at 596.428 kb on + strand, within AZOBR_RS28640 at 596.428 kb on + strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640 at 596.429 kb on - strand, within AZOBR_RS28640
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 594,351 - +0.6 594,608 + AZOBR_RS28615 0.70 +1.4 594,609 - AZOBR_RS28615 0.70 -0.1 594,609 - AZOBR_RS28615 0.70 +0.6 595,223 + AZOBR_RS28620 0.75 -1.0 595,224 - AZOBR_RS28620 0.75 -2.6 595,239 + AZOBR_RS28620 0.80 -1.4 595,301 + -0.7 595,301 + +0.3 595,301 + -0.2 595,301 + -3.6 595,301 + -0.5 595,301 + +1.4 595,301 + -0.7 595,302 - -0.6 595,302 - +0.7 595,302 - +0.8 595,312 + -0.1 595,313 - -2.9 595,500 + AZOBR_RS28625 0.85 -0.5 595,803 + AZOBR_RS28630 0.86 +0.6 595,803 + AZOBR_RS28630 0.86 -0.2 595,804 - AZOBR_RS28630 0.86 -2.7 595,804 - AZOBR_RS28630 0.86 -3.7 595,911 - AZOBR_RS28635 0.25 -0.2 595,911 - AZOBR_RS28635 0.25 +0.0 596,045 + AZOBR_RS28635 0.73 +2.1 596,045 + AZOBR_RS28635 0.73 +0.7 596,045 + AZOBR_RS28635 0.73 +1.0 596,046 - AZOBR_RS28635 0.74 -1.7 596,195 + -2.8 596,303 + -0.5 596,303 + -4.0 596,303 + +1.0 596,303 + +0.6 596,304 - -0.2 596,304 - -1.2 596,304 - -2.9 596,304 - -0.1 596,304 - +0.3 596,428 + AZOBR_RS28640 0.39 +0.8 596,428 + AZOBR_RS28640 0.39 +0.0 596,428 + AZOBR_RS28640 0.39 +0.3 596,428 + AZOBR_RS28640 0.39 +1.0 596,429 - AZOBR_RS28640 0.39 +0.7 596,429 - AZOBR_RS28640 0.39 +1.0 596,429 - AZOBR_RS28640 0.39 -2.8 596,429 - AZOBR_RS28640 0.39 -1.1 596,429 - AZOBR_RS28640 0.39 +0.3 596,429 - AZOBR_RS28640 0.39 -0.5 596,429 - AZOBR_RS28640 0.39 -1.2 596,429 - AZOBR_RS28640 0.39 +0.5 596,429 - AZOBR_RS28640 0.39 -0.5
Or see this region's nucleotide sequence