Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27950 and AZOBR_RS27955 are separated by 131 nucleotides AZOBR_RS27955 and AZOBR_RS27960 overlap by 4 nucleotides
AZOBR_RS27950: AZOBR_RS27950 - transcriptional regulator, at 440,933 to 442,111
_RS27950
AZOBR_RS27955: AZOBR_RS27955 - glycoside hydrolase family 43, at 442,243 to 443,313
_RS27955
AZOBR_RS27960: AZOBR_RS27960 - multidrug ABC transporter ATP-binding protein, at 443,310 to 446,057
_RS27960
Position (kb) 442
443
444 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 441.728 kb on + strand, within AZOBR_RS27950 at 441.729 kb on - strand, within AZOBR_RS27950 at 441.729 kb on - strand, within AZOBR_RS27950 at 442.109 kb on + strand at 442.109 kb on + strand at 442.109 kb on + strand at 442.195 kb on - strand at 442.316 kb on + strand at 442.993 kb on + strand, within AZOBR_RS27955 at 442.993 kb on + strand, within AZOBR_RS27955 at 442.993 kb on + strand, within AZOBR_RS27955 at 442.994 kb on - strand, within AZOBR_RS27955 at 442.994 kb on - strand, within AZOBR_RS27955 at 442.994 kb on - strand, within AZOBR_RS27955 at 442.994 kb on - strand, within AZOBR_RS27955 at 442.994 kb on - strand, within AZOBR_RS27955 at 443.080 kb on + strand, within AZOBR_RS27955 at 443.080 kb on + strand, within AZOBR_RS27955 at 443.080 kb on + strand, within AZOBR_RS27955 at 443.215 kb on + strand at 443.254 kb on + strand at 443.254 kb on + strand at 443.255 kb on - strand at 443.255 kb on - strand at 443.376 kb on + strand at 443.376 kb on + strand at 443.377 kb on - strand at 443.583 kb on + strand at 443.583 kb on + strand at 443.584 kb on - strand at 443.584 kb on - strand at 443.584 kb on - strand at 443.935 kb on - strand, within AZOBR_RS27960
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 441,728 + AZOBR_RS27950 0.67 -0.6 441,729 - AZOBR_RS27950 0.68 -3.4 441,729 - AZOBR_RS27950 0.68 -0.1 442,109 + -2.4 442,109 + -0.2 442,109 + -3.9 442,195 - -4.8 442,316 + -0.3 442,993 + AZOBR_RS27955 0.70 -0.7 442,993 + AZOBR_RS27955 0.70 +0.2 442,993 + AZOBR_RS27955 0.70 +0.1 442,994 - AZOBR_RS27955 0.70 +1.3 442,994 - AZOBR_RS27955 0.70 +0.7 442,994 - AZOBR_RS27955 0.70 -1.5 442,994 - AZOBR_RS27955 0.70 -1.0 442,994 - AZOBR_RS27955 0.70 +0.5 443,080 + AZOBR_RS27955 0.78 +0.8 443,080 + AZOBR_RS27955 0.78 +0.8 443,080 + AZOBR_RS27955 0.78 -3.7 443,215 + -0.2 443,254 + +0.3 443,254 + +0.2 443,255 - +2.8 443,255 - +0.3 443,376 + -1.2 443,376 + +0.7 443,377 - -1.5 443,583 + +2.6 443,583 + -1.0 443,584 - -1.9 443,584 - -1.4 443,584 - -0.2 443,935 - AZOBR_RS27960 0.23 -1.4
Or see this region's nucleotide sequence