Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27930 and AZOBR_RS27935 are separated by 56 nucleotides AZOBR_RS27935 and AZOBR_RS27940 are separated by 27 nucleotides
AZOBR_RS27930: AZOBR_RS27930 - AP endonuclease, at 436,107 to 437,162
_RS27930
AZOBR_RS27935: AZOBR_RS27935 - ABC transporter substrate-binding protein, at 437,219 to 438,172
_RS27935
AZOBR_RS27940: AZOBR_RS27940 - ABC transporter permease, at 438,200 to 439,189
_RS27940
Position (kb) 437
438
439 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 436.292 kb on - strand, within AZOBR_RS27930 at 436.459 kb on + strand, within AZOBR_RS27930 at 436.471 kb on + strand, within AZOBR_RS27930 at 436.721 kb on - strand, within AZOBR_RS27930 at 436.721 kb on - strand at 436.727 kb on - strand, within AZOBR_RS27930 at 436.886 kb on - strand, within AZOBR_RS27930 at 437.239 kb on - strand at 437.242 kb on - strand at 437.289 kb on + strand at 437.289 kb on + strand at 437.289 kb on + strand at 437.290 kb on - strand at 437.290 kb on - strand at 437.290 kb on - strand at 437.599 kb on - strand, within AZOBR_RS27935 at 437.778 kb on + strand, within AZOBR_RS27935 at 437.778 kb on + strand, within AZOBR_RS27935 at 437.778 kb on + strand, within AZOBR_RS27935 at 437.778 kb on + strand, within AZOBR_RS27935 at 437.779 kb on - strand, within AZOBR_RS27935 at 437.779 kb on - strand, within AZOBR_RS27935 at 438.251 kb on + strand at 438.252 kb on - strand at 438.276 kb on + strand at 438.277 kb on - strand at 438.465 kb on + strand, within AZOBR_RS27940 at 438.466 kb on - strand, within AZOBR_RS27940 at 438.466 kb on - strand, within AZOBR_RS27940 at 438.466 kb on - strand, within AZOBR_RS27940 at 438.546 kb on + strand, within AZOBR_RS27940 at 438.606 kb on + strand, within AZOBR_RS27940 at 438.607 kb on - strand, within AZOBR_RS27940 at 438.607 kb on - strand, within AZOBR_RS27940 at 438.682 kb on - strand, within AZOBR_RS27940 at 438.682 kb on - strand, within AZOBR_RS27940 at 438.684 kb on + strand, within AZOBR_RS27940 at 438.684 kb on + strand, within AZOBR_RS27940 at 438.684 kb on + strand, within AZOBR_RS27940 at 438.747 kb on + strand, within AZOBR_RS27940 at 438.748 kb on - strand, within AZOBR_RS27940 at 438.748 kb on - strand, within AZOBR_RS27940 at 438.748 kb on - strand, within AZOBR_RS27940 at 439.140 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 436,292 - AZOBR_RS27930 0.18 +0.3 436,459 + AZOBR_RS27930 0.33 -1.8 436,471 + AZOBR_RS27930 0.34 +0.7 436,721 - AZOBR_RS27930 0.58 +0.7 436,721 - -0.3 436,727 - AZOBR_RS27930 0.59 +0.4 436,886 - AZOBR_RS27930 0.74 -4.6 437,239 - -1.7 437,242 - -0.2 437,289 + -1.4 437,289 + +0.4 437,289 + +1.0 437,290 - -1.0 437,290 - -0.6 437,290 - +0.6 437,599 - AZOBR_RS27935 0.40 -0.1 437,778 + AZOBR_RS27935 0.59 -0.0 437,778 + AZOBR_RS27935 0.59 +1.4 437,778 + AZOBR_RS27935 0.59 +0.7 437,778 + AZOBR_RS27935 0.59 -0.1 437,779 - AZOBR_RS27935 0.59 +1.1 437,779 - AZOBR_RS27935 0.59 -3.8 438,251 + +1.5 438,252 - -2.9 438,276 + +0.5 438,277 - +1.0 438,465 + AZOBR_RS27940 0.27 -0.6 438,466 - AZOBR_RS27940 0.27 -2.9 438,466 - AZOBR_RS27940 0.27 +0.1 438,466 - AZOBR_RS27940 0.27 -0.8 438,546 + AZOBR_RS27940 0.35 -1.5 438,606 + AZOBR_RS27940 0.41 +0.3 438,607 - AZOBR_RS27940 0.41 +2.1 438,607 - AZOBR_RS27940 0.41 -0.2 438,682 - AZOBR_RS27940 0.49 +0.0 438,682 - AZOBR_RS27940 0.49 +0.1 438,684 + AZOBR_RS27940 0.49 -0.1 438,684 + AZOBR_RS27940 0.49 -0.1 438,684 + AZOBR_RS27940 0.49 +1.6 438,747 + AZOBR_RS27940 0.55 -0.7 438,748 - AZOBR_RS27940 0.55 +0.2 438,748 - AZOBR_RS27940 0.55 +0.1 438,748 - AZOBR_RS27940 0.55 +0.6 439,140 + +2.3
Or see this region's nucleotide sequence