Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27725 and AZOBR_RS27730 are separated by 62 nucleotides AZOBR_RS27730 and AZOBR_RS27735 are separated by 62 nucleotides AZOBR_RS27735 and AZOBR_RS27740 are separated by 136 nucleotides
AZOBR_RS27725: AZOBR_RS27725 - hypothetical protein, at 386,481 to 386,765
_RS27725
AZOBR_RS27730: AZOBR_RS27730 - hypothetical protein, at 386,828 to 387,160
_RS27730
AZOBR_RS27735: AZOBR_RS27735 - hypothetical protein, at 387,223 to 387,675
_RS27735
AZOBR_RS27740: AZOBR_RS27740 - hypothetical protein, at 387,812 to 389,290
_RS27740
Position (kb) 387
388 Strain fitness (log2 ratio) -2
-1
0
1 at 386.901 kb on + strand, within AZOBR_RS27730 at 386.901 kb on + strand, within AZOBR_RS27730 at 387.509 kb on + strand, within AZOBR_RS27735 at 387.510 kb on - strand, within AZOBR_RS27735 at 387.510 kb on - strand, within AZOBR_RS27735 at 387.510 kb on - strand, within AZOBR_RS27735 at 387.510 kb on - strand, within AZOBR_RS27735 at 387.513 kb on - strand, within AZOBR_RS27735 at 388.053 kb on + strand, within AZOBR_RS27740 at 388.053 kb on + strand, within AZOBR_RS27740 at 388.053 kb on + strand, within AZOBR_RS27740 at 388.053 kb on + strand, within AZOBR_RS27740 at 388.053 kb on + strand, within AZOBR_RS27740 at 388.054 kb on - strand, within AZOBR_RS27740 at 388.630 kb on - strand, within AZOBR_RS27740
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 386,901 + AZOBR_RS27730 0.22 +0.8 386,901 + AZOBR_RS27730 0.22 -1.6 387,509 + AZOBR_RS27735 0.63 -1.9 387,510 - AZOBR_RS27735 0.63 +0.1 387,510 - AZOBR_RS27735 0.63 -0.1 387,510 - AZOBR_RS27735 0.63 -0.9 387,510 - AZOBR_RS27735 0.63 -1.3 387,513 - AZOBR_RS27735 0.64 -0.1 388,053 + AZOBR_RS27740 0.16 -2.3 388,053 + AZOBR_RS27740 0.16 -1.1 388,053 + AZOBR_RS27740 0.16 -1.5 388,053 + AZOBR_RS27740 0.16 +1.0 388,053 + AZOBR_RS27740 0.16 +0.2 388,054 - AZOBR_RS27740 0.16 +0.4 388,630 - AZOBR_RS27740 0.55 +0.5
Or see this region's nucleotide sequence