Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27700 and AZOBR_RS27705 are separated by 4 nucleotides AZOBR_RS27705 and AZOBR_RS27710 are separated by 456 nucleotides
AZOBR_RS27700: AZOBR_RS27700 - hypothetical protein, at 376,565 to 377,827
_RS27700
AZOBR_RS27705: AZOBR_RS27705 - hypothetical protein, at 377,832 to 380,573
_RS27705
AZOBR_RS27710: AZOBR_RS27710 - hypothetical protein, at 381,030 to 381,809
_RS27710
Position (kb) 377
378
379
380
381 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 376.876 kb on + strand, within AZOBR_RS27700 at 376.876 kb on + strand, within AZOBR_RS27700 at 376.929 kb on + strand, within AZOBR_RS27700 at 376.970 kb on + strand, within AZOBR_RS27700 at 376.971 kb on - strand, within AZOBR_RS27700 at 376.971 kb on - strand, within AZOBR_RS27700 at 376.971 kb on - strand, within AZOBR_RS27700 at 376.971 kb on - strand, within AZOBR_RS27700 at 376.986 kb on + strand, within AZOBR_RS27700 at 376.987 kb on - strand, within AZOBR_RS27700 at 377.064 kb on + strand, within AZOBR_RS27700 at 377.065 kb on - strand, within AZOBR_RS27700 at 377.265 kb on + strand, within AZOBR_RS27700 at 377.266 kb on - strand, within AZOBR_RS27700 at 377.266 kb on - strand, within AZOBR_RS27700 at 377.266 kb on - strand, within AZOBR_RS27700 at 377.373 kb on + strand, within AZOBR_RS27700 at 377.374 kb on - strand, within AZOBR_RS27700 at 377.432 kb on - strand, within AZOBR_RS27700 at 377.470 kb on + strand, within AZOBR_RS27700 at 377.475 kb on + strand, within AZOBR_RS27700 at 377.475 kb on + strand, within AZOBR_RS27700 at 377.476 kb on - strand, within AZOBR_RS27700 at 377.520 kb on + strand, within AZOBR_RS27700 at 377.520 kb on + strand, within AZOBR_RS27700 at 377.520 kb on + strand, within AZOBR_RS27700 at 377.520 kb on + strand, within AZOBR_RS27700 at 377.520 kb on + strand, within AZOBR_RS27700 at 377.520 kb on + strand, within AZOBR_RS27700 at 377.521 kb on - strand, within AZOBR_RS27700 at 377.589 kb on + strand, within AZOBR_RS27700 at 377.589 kb on + strand, within AZOBR_RS27700 at 377.801 kb on - strand at 378.196 kb on + strand, within AZOBR_RS27705 at 378.196 kb on + strand, within AZOBR_RS27705 at 378.337 kb on + strand, within AZOBR_RS27705 at 378.364 kb on + strand, within AZOBR_RS27705 at 379.127 kb on - strand, within AZOBR_RS27705 at 379.394 kb on - strand, within AZOBR_RS27705 at 379.394 kb on - strand, within AZOBR_RS27705 at 379.693 kb on + strand, within AZOBR_RS27705 at 380.218 kb on + strand, within AZOBR_RS27705 at 380.219 kb on - strand, within AZOBR_RS27705 at 380.219 kb on - strand, within AZOBR_RS27705 at 380.219 kb on - strand, within AZOBR_RS27705 at 380.281 kb on + strand, within AZOBR_RS27705 at 380.282 kb on - strand, within AZOBR_RS27705 at 380.282 kb on - strand, within AZOBR_RS27705 at 380.408 kb on - strand at 380.524 kb on + strand at 380.525 kb on - strand at 380.669 kb on + strand at 380.814 kb on - strand at 380.814 kb on - strand at 380.825 kb on + strand at 381.127 kb on + strand, within AZOBR_RS27710 at 381.286 kb on + strand, within AZOBR_RS27710 at 381.287 kb on - strand, within AZOBR_RS27710 at 381.287 kb on - strand, within AZOBR_RS27710 at 381.287 kb on - strand, within AZOBR_RS27710 at 381.484 kb on + strand, within AZOBR_RS27710 at 381.484 kb on + strand, within AZOBR_RS27710 at 381.484 kb on + strand, within AZOBR_RS27710 at 381.484 kb on + strand, within AZOBR_RS27710 at 381.485 kb on - strand, within AZOBR_RS27710 at 381.485 kb on - strand, within AZOBR_RS27710 at 381.504 kb on - strand, within AZOBR_RS27710 at 381.520 kb on + strand, within AZOBR_RS27710 at 381.520 kb on + strand, within AZOBR_RS27710 at 381.521 kb on - strand, within AZOBR_RS27710 at 381.521 kb on - strand, within AZOBR_RS27710
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 376,876 + AZOBR_RS27700 0.25 -0.4 376,876 + AZOBR_RS27700 0.25 -3.1 376,929 + AZOBR_RS27700 0.29 -1.1 376,970 + AZOBR_RS27700 0.32 +0.2 376,971 - AZOBR_RS27700 0.32 +0.3 376,971 - AZOBR_RS27700 0.32 -3.8 376,971 - AZOBR_RS27700 0.32 +0.8 376,971 - AZOBR_RS27700 0.32 +1.3 376,986 + AZOBR_RS27700 0.33 -0.7 376,987 - AZOBR_RS27700 0.33 -0.8 377,064 + AZOBR_RS27700 0.40 -0.3 377,065 - AZOBR_RS27700 0.40 -0.8 377,265 + AZOBR_RS27700 0.55 +0.2 377,266 - AZOBR_RS27700 0.56 +0.1 377,266 - AZOBR_RS27700 0.56 +1.5 377,266 - AZOBR_RS27700 0.56 +0.7 377,373 + AZOBR_RS27700 0.64 +1.4 377,374 - AZOBR_RS27700 0.64 -3.8 377,432 - AZOBR_RS27700 0.69 +2.9 377,470 + AZOBR_RS27700 0.72 -0.1 377,475 + AZOBR_RS27700 0.72 +1.3 377,475 + AZOBR_RS27700 0.72 +0.3 377,476 - AZOBR_RS27700 0.72 +0.2 377,520 + AZOBR_RS27700 0.76 -2.4 377,520 + AZOBR_RS27700 0.76 +0.7 377,520 + AZOBR_RS27700 0.76 +0.5 377,520 + AZOBR_RS27700 0.76 +0.3 377,520 + AZOBR_RS27700 0.76 -3.2 377,520 + AZOBR_RS27700 0.76 -0.2 377,521 - AZOBR_RS27700 0.76 -2.0 377,589 + AZOBR_RS27700 0.81 +0.6 377,589 + AZOBR_RS27700 0.81 +0.2 377,801 - -0.9 378,196 + AZOBR_RS27705 0.13 +1.3 378,196 + AZOBR_RS27705 0.13 -1.4 378,337 + AZOBR_RS27705 0.18 +0.9 378,364 + AZOBR_RS27705 0.19 -2.8 379,127 - AZOBR_RS27705 0.47 +1.3 379,394 - AZOBR_RS27705 0.57 -0.2 379,394 - AZOBR_RS27705 0.57 +0.3 379,693 + AZOBR_RS27705 0.68 +0.3 380,218 + AZOBR_RS27705 0.87 +1.5 380,219 - AZOBR_RS27705 0.87 -0.5 380,219 - AZOBR_RS27705 0.87 +1.0 380,219 - AZOBR_RS27705 0.87 +1.1 380,281 + AZOBR_RS27705 0.89 +0.2 380,282 - AZOBR_RS27705 0.89 +0.7 380,282 - AZOBR_RS27705 0.89 +1.8 380,408 - -1.9 380,524 + -0.3 380,525 - -2.4 380,669 + +0.2 380,814 - +1.0 380,814 - -3.0 380,825 + -3.6 381,127 + AZOBR_RS27710 0.12 -0.3 381,286 + AZOBR_RS27710 0.33 +2.0 381,287 - AZOBR_RS27710 0.33 -0.1 381,287 - AZOBR_RS27710 0.33 -1.5 381,287 - AZOBR_RS27710 0.33 +1.6 381,484 + AZOBR_RS27710 0.58 +0.4 381,484 + AZOBR_RS27710 0.58 -1.5 381,484 + AZOBR_RS27710 0.58 +1.0 381,484 + AZOBR_RS27710 0.58 -1.3 381,485 - AZOBR_RS27710 0.58 +0.8 381,485 - AZOBR_RS27710 0.58 +1.0 381,504 - AZOBR_RS27710 0.61 -3.2 381,520 + AZOBR_RS27710 0.63 -0.8 381,520 + AZOBR_RS27710 0.63 -0.3 381,521 - AZOBR_RS27710 0.63 -0.4 381,521 - AZOBR_RS27710 0.63 +0.1
Or see this region's nucleotide sequence