Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26605 and AZOBR_RS26610 are separated by 159 nucleotides AZOBR_RS26610 and AZOBR_RS26615 are separated by 20 nucleotides AZOBR_RS26615 and AZOBR_RS26620 are separated by 244 nucleotides
AZOBR_RS26605: AZOBR_RS26605 - TonB-denpendent receptor, at 112,582 to 115,071
_RS26605
AZOBR_RS26610: AZOBR_RS26610 - iron dicitrate transport regulator FecR, at 115,231 to 116,274
_RS26610
AZOBR_RS26615: AZOBR_RS26615 - RNA polymerase, at 116,295 to 116,888
_RS26615
AZOBR_RS26620: AZOBR_RS26620 - putative transcriptional regulator GntR family, at 117,133 to 117,807
_RS26620
Position (kb)
115
116
117 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 114.350 kb on + strand, within AZOBR_RS26605 at 114.350 kb on + strand, within AZOBR_RS26605 at 114.351 kb on - strand, within AZOBR_RS26605 at 114.351 kb on - strand, within AZOBR_RS26605 at 114.351 kb on - strand, within AZOBR_RS26605 at 114.464 kb on + strand, within AZOBR_RS26605 at 114.464 kb on + strand, within AZOBR_RS26605 at 114.464 kb on + strand, within AZOBR_RS26605 at 114.465 kb on - strand, within AZOBR_RS26605 at 114.465 kb on - strand, within AZOBR_RS26605 at 114.465 kb on - strand, within AZOBR_RS26605 at 114.597 kb on - strand, within AZOBR_RS26605 at 114.597 kb on - strand, within AZOBR_RS26605 at 114.713 kb on + strand, within AZOBR_RS26605 at 114.960 kb on - strand at 115.050 kb on + strand at 115.246 kb on + strand at 115.397 kb on + strand, within AZOBR_RS26610 at 115.397 kb on + strand, within AZOBR_RS26610 at 115.622 kb on + strand, within AZOBR_RS26610 at 115.622 kb on + strand, within AZOBR_RS26610 at 115.623 kb on - strand, within AZOBR_RS26610 at 116.313 kb on + strand at 116.313 kb on + strand at 116.313 kb on + strand at 116.314 kb on - strand at 116.314 kb on - strand at 116.314 kb on - strand at 116.764 kb on + strand, within AZOBR_RS26615 at 116.765 kb on - strand, within AZOBR_RS26615 at 116.765 kb on - strand, within AZOBR_RS26615 at 116.765 kb on - strand, within AZOBR_RS26615 at 117.134 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 114,350 + AZOBR_RS26605 0.71 +0.4 114,350 + AZOBR_RS26605 0.71 -0.1 114,351 - AZOBR_RS26605 0.71 +0.3 114,351 - AZOBR_RS26605 0.71 -2.3 114,351 - AZOBR_RS26605 0.71 +0.4 114,464 + AZOBR_RS26605 0.76 +0.2 114,464 + AZOBR_RS26605 0.76 +0.0 114,464 + AZOBR_RS26605 0.76 -2.3 114,465 - AZOBR_RS26605 0.76 -1.1 114,465 - AZOBR_RS26605 0.76 +0.3 114,465 - AZOBR_RS26605 0.76 +1.2 114,597 - AZOBR_RS26605 0.81 -0.2 114,597 - AZOBR_RS26605 0.81 -0.5 114,713 + AZOBR_RS26605 0.86 +0.8 114,960 - -2.0 115,050 + -0.7 115,246 + +2.7 115,397 + AZOBR_RS26610 0.16 +0.9 115,397 + AZOBR_RS26610 0.16 +0.3 115,622 + AZOBR_RS26610 0.37 -1.7 115,622 + AZOBR_RS26610 0.37 -0.6 115,623 - AZOBR_RS26610 0.38 -0.2 116,313 + -2.4 116,313 + -3.3 116,313 + -0.9 116,314 - -0.4 116,314 - -0.4 116,314 - +0.7 116,764 + AZOBR_RS26615 0.79 -2.8 116,765 - AZOBR_RS26615 0.79 -0.7 116,765 - AZOBR_RS26615 0.79 -2.2 116,765 - AZOBR_RS26615 0.79 -1.7 117,134 + -1.8
Or see this region's nucleotide sequence