Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26595 and AZOBR_RS26600 overlap by 4 nucleotides AZOBR_RS26600 and AZOBR_RS26605 overlap by 4 nucleotides
AZOBR_RS26595: AZOBR_RS26595 - membrane protein, at 110,751 to 112,298
_RS26595
AZOBR_RS26600: AZOBR_RS26600 - membrane protein, at 112,295 to 112,585
_RS26600
AZOBR_RS26605: AZOBR_RS26605 - TonB-denpendent receptor, at 112,582 to 115,071
_RS26605
Position (kb) 112
113 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 111.407 kb on + strand, within AZOBR_RS26595 at 111.408 kb on - strand, within AZOBR_RS26595 at 111.667 kb on + strand, within AZOBR_RS26595 at 111.667 kb on + strand, within AZOBR_RS26595 at 111.667 kb on + strand, within AZOBR_RS26595 at 111.667 kb on + strand, within AZOBR_RS26595 at 111.668 kb on - strand, within AZOBR_RS26595 at 111.668 kb on - strand, within AZOBR_RS26595 at 111.668 kb on - strand, within AZOBR_RS26595 at 111.668 kb on - strand, within AZOBR_RS26595 at 111.716 kb on - strand, within AZOBR_RS26595 at 111.878 kb on - strand, within AZOBR_RS26595 at 111.919 kb on + strand, within AZOBR_RS26595 at 111.919 kb on + strand, within AZOBR_RS26595 at 111.919 kb on + strand, within AZOBR_RS26595 at 111.920 kb on - strand, within AZOBR_RS26595 at 111.923 kb on - strand, within AZOBR_RS26595 at 112.008 kb on + strand, within AZOBR_RS26595 at 112.008 kb on + strand, within AZOBR_RS26595 at 112.030 kb on + strand, within AZOBR_RS26595 at 112.030 kb on + strand, within AZOBR_RS26595 at 112.031 kb on - strand, within AZOBR_RS26595 at 112.195 kb on + strand at 112.195 kb on + strand at 112.196 kb on - strand at 112.196 kb on - strand at 112.298 kb on + strand at 112.298 kb on + strand at 112.593 kb on - strand at 112.593 kb on - strand at 112.629 kb on - strand at 112.629 kb on - strand at 112.631 kb on + strand at 112.632 kb on - strand at 112.632 kb on - strand at 112.664 kb on + strand at 112.664 kb on + strand at 112.664 kb on + strand at 112.665 kb on - strand at 112.730 kb on + strand at 112.731 kb on - strand at 112.731 kb on - strand at 112.805 kb on + strand at 112.805 kb on + strand at 112.806 kb on - strand at 112.821 kb on - strand at 112.874 kb on + strand, within AZOBR_RS26605 at 112.874 kb on + strand at 112.875 kb on - strand, within AZOBR_RS26605 at 112.875 kb on - strand, within AZOBR_RS26605 at 112.973 kb on + strand, within AZOBR_RS26605 at 112.974 kb on - strand, within AZOBR_RS26605 at 113.063 kb on + strand, within AZOBR_RS26605 at 113.064 kb on - strand, within AZOBR_RS26605 at 113.064 kb on - strand, within AZOBR_RS26605 at 113.064 kb on - strand, within AZOBR_RS26605 at 113.157 kb on - strand, within AZOBR_RS26605 at 113.175 kb on - strand, within AZOBR_RS26605 at 113.259 kb on - strand, within AZOBR_RS26605 at 113.285 kb on + strand, within AZOBR_RS26605 at 113.286 kb on - strand, within AZOBR_RS26605 at 113.433 kb on - strand, within AZOBR_RS26605
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 111,407 + AZOBR_RS26595 0.42 +0.6 111,408 - AZOBR_RS26595 0.42 +0.4 111,667 + AZOBR_RS26595 0.59 -0.2 111,667 + AZOBR_RS26595 0.59 -2.3 111,667 + AZOBR_RS26595 0.59 +0.0 111,667 + AZOBR_RS26595 0.59 -1.9 111,668 - AZOBR_RS26595 0.59 -0.5 111,668 - AZOBR_RS26595 0.59 -0.7 111,668 - AZOBR_RS26595 0.59 +0.5 111,668 - AZOBR_RS26595 0.59 -1.7 111,716 - AZOBR_RS26595 0.62 +0.3 111,878 - AZOBR_RS26595 0.73 +0.1 111,919 + AZOBR_RS26595 0.75 -2.3 111,919 + AZOBR_RS26595 0.75 +0.8 111,919 + AZOBR_RS26595 0.75 -2.2 111,920 - AZOBR_RS26595 0.76 +1.5 111,923 - AZOBR_RS26595 0.76 +0.2 112,008 + AZOBR_RS26595 0.81 -2.2 112,008 + AZOBR_RS26595 0.81 +1.5 112,030 + AZOBR_RS26595 0.83 +0.5 112,030 + AZOBR_RS26595 0.83 +1.3 112,031 - AZOBR_RS26595 0.83 +1.7 112,195 + -0.5 112,195 + +0.3 112,196 - -1.0 112,196 - +1.4 112,298 + -0.2 112,298 + +0.2 112,593 - +0.7 112,593 - -1.1 112,629 - +0.7 112,629 - -0.2 112,631 + +1.5 112,632 - -2.1 112,632 - -0.8 112,664 + -2.8 112,664 + +0.4 112,664 + +0.1 112,665 - +0.5 112,730 + -0.1 112,731 - +0.5 112,731 - -0.3 112,805 + +0.6 112,805 + -3.0 112,806 - +1.3 112,821 - -1.0 112,874 + AZOBR_RS26605 0.12 -0.3 112,874 + -0.7 112,875 - AZOBR_RS26605 0.12 -0.3 112,875 - AZOBR_RS26605 0.12 -2.5 112,973 + AZOBR_RS26605 0.16 -0.8 112,974 - AZOBR_RS26605 0.16 -0.5 113,063 + AZOBR_RS26605 0.19 +1.7 113,064 - AZOBR_RS26605 0.19 -0.6 113,064 - AZOBR_RS26605 0.19 +1.5 113,064 - AZOBR_RS26605 0.19 +0.1 113,157 - AZOBR_RS26605 0.23 +0.6 113,175 - AZOBR_RS26605 0.24 -0.1 113,259 - AZOBR_RS26605 0.27 -0.1 113,285 + AZOBR_RS26605 0.28 -1.3 113,286 - AZOBR_RS26605 0.28 +0.0 113,433 - AZOBR_RS26605 0.34 -0.2
Or see this region's nucleotide sequence