Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26585 and AZOBR_RS26590 are separated by 121 nucleotides AZOBR_RS26590 and AZOBR_RS26595 are separated by 110 nucleotides
AZOBR_RS26585: AZOBR_RS26585 - AraC family transcriptional regulator, at 108,753 to 109,709
_RS26585
AZOBR_RS26590: AZOBR_RS26590 - AraC family transcriptional regulator, at 109,831 to 110,640
_RS26590
AZOBR_RS26595: AZOBR_RS26595 - membrane protein, at 110,751 to 112,298
_RS26595
Position (kb)
109
110
111 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 109.073 kb on - strand, within AZOBR_RS26585 at 109.159 kb on + strand, within AZOBR_RS26585 at 109.159 kb on + strand, within AZOBR_RS26585 at 109.159 kb on + strand, within AZOBR_RS26585 at 109.160 kb on - strand, within AZOBR_RS26585 at 109.160 kb on - strand, within AZOBR_RS26585 at 109.160 kb on - strand, within AZOBR_RS26585 at 109.160 kb on - strand, within AZOBR_RS26585 at 109.160 kb on - strand, within AZOBR_RS26585 at 109.160 kb on - strand, within AZOBR_RS26585 at 109.160 kb on - strand, within AZOBR_RS26585 at 109.609 kb on + strand, within AZOBR_RS26585 at 109.609 kb on + strand, within AZOBR_RS26585 at 109.609 kb on + strand, within AZOBR_RS26585 at 109.609 kb on + strand, within AZOBR_RS26585 at 109.610 kb on - strand, within AZOBR_RS26585 at 109.610 kb on - strand, within AZOBR_RS26585 at 109.610 kb on - strand, within AZOBR_RS26585 at 109.610 kb on - strand, within AZOBR_RS26585 at 109.610 kb on - strand, within AZOBR_RS26585 at 109.610 kb on - strand, within AZOBR_RS26585 at 109.610 kb on - strand, within AZOBR_RS26585 at 109.688 kb on - strand at 109.688 kb on - strand at 109.774 kb on + strand at 109.775 kb on - strand at 109.775 kb on - strand at 109.775 kb on - strand at 109.775 kb on - strand at 109.775 kb on - strand at 109.775 kb on - strand at 109.895 kb on - strand at 110.197 kb on + strand, within AZOBR_RS26590 at 110.198 kb on - strand, within AZOBR_RS26590 at 110.294 kb on - strand, within AZOBR_RS26590 at 110.554 kb on + strand, within AZOBR_RS26590 at 110.555 kb on - strand, within AZOBR_RS26590 at 111.226 kb on + strand, within AZOBR_RS26595 at 111.226 kb on + strand, within AZOBR_RS26595 at 111.227 kb on - strand, within AZOBR_RS26595 at 111.227 kb on - strand, within AZOBR_RS26595 at 111.407 kb on + strand, within AZOBR_RS26595 at 111.408 kb on - strand, within AZOBR_RS26595
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 109,073 - AZOBR_RS26585 0.33 -0.4 109,159 + AZOBR_RS26585 0.42 +0.2 109,159 + AZOBR_RS26585 0.42 +1.8 109,159 + AZOBR_RS26585 0.42 +1.0 109,160 - AZOBR_RS26585 0.43 -0.1 109,160 - AZOBR_RS26585 0.43 +0.4 109,160 - AZOBR_RS26585 0.43 -0.8 109,160 - AZOBR_RS26585 0.43 +0.7 109,160 - AZOBR_RS26585 0.43 +1.5 109,160 - AZOBR_RS26585 0.43 -1.3 109,160 - AZOBR_RS26585 0.43 +1.5 109,609 + AZOBR_RS26585 0.89 -1.4 109,609 + AZOBR_RS26585 0.89 +1.7 109,609 + AZOBR_RS26585 0.89 -1.0 109,609 + AZOBR_RS26585 0.89 +0.8 109,610 - AZOBR_RS26585 0.90 -1.1 109,610 - AZOBR_RS26585 0.90 +0.0 109,610 - AZOBR_RS26585 0.90 -0.2 109,610 - AZOBR_RS26585 0.90 -0.5 109,610 - AZOBR_RS26585 0.90 +0.9 109,610 - AZOBR_RS26585 0.90 +1.7 109,610 - AZOBR_RS26585 0.90 -0.1 109,688 - +1.3 109,688 - -0.5 109,774 + -0.8 109,775 - +1.6 109,775 - +0.2 109,775 - -2.2 109,775 - +0.2 109,775 - +0.7 109,775 - +1.2 109,895 - +0.8 110,197 + AZOBR_RS26590 0.45 +0.0 110,198 - AZOBR_RS26590 0.45 -1.0 110,294 - AZOBR_RS26590 0.57 -0.6 110,554 + AZOBR_RS26590 0.89 -0.3 110,555 - AZOBR_RS26590 0.89 -0.4 111,226 + AZOBR_RS26595 0.31 -1.3 111,226 + AZOBR_RS26595 0.31 -0.2 111,227 - AZOBR_RS26595 0.31 -0.8 111,227 - AZOBR_RS26595 0.31 +1.6 111,407 + AZOBR_RS26595 0.42 +0.6 111,408 - AZOBR_RS26595 0.42 +0.4
Or see this region's nucleotide sequence