Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26460

Experiment: Sisomicin 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS26455 and AZOBR_RS26460 are separated by 34 nucleotidesAZOBR_RS26460 and AZOBR_RS26465 are separated by 95 nucleotides AZOBR_RS26455: AZOBR_RS26455 - LysR family transcriptional regulator, at 80,524 to 81,462 _RS26455 AZOBR_RS26460: AZOBR_RS26460 - hypothetical protein, at 81,497 to 82,126 _RS26460 AZOBR_RS26465: AZOBR_RS26465 - MmgE/PrpD family protein 4, at 82,222 to 83,481 _RS26465 Position (kb) 81 82 83Strain fitness (log2 ratio) -3 -2 -1 0 1at 80.963 kb on - strand, within AZOBR_RS26455at 80.963 kb on - strand, within AZOBR_RS26455at 80.963 kb on - strand, within AZOBR_RS26455at 81.499 kb on - strandat 81.643 kb on - strandat 81.801 kb on + strand, within AZOBR_RS26460at 81.802 kb on - strand, within AZOBR_RS26460at 81.802 kb on - strand, within AZOBR_RS26460at 81.960 kb on + strand, within AZOBR_RS26460at 81.961 kb on - strandat 81.961 kb on - strand, within AZOBR_RS26460at 81.967 kb on - strand, within AZOBR_RS26460at 81.967 kb on - strand, within AZOBR_RS26460at 82.024 kb on + strand, within AZOBR_RS26460at 82.026 kb on + strand, within AZOBR_RS26460at 82.298 kb on + strandat 82.299 kb on - strandat 82.389 kb on + strand, within AZOBR_RS26465at 82.390 kb on - strand, within AZOBR_RS26465at 82.390 kb on - strand, within AZOBR_RS26465

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
remove
80,963 - AZOBR_RS26455 0.47 +0.5
80,963 - AZOBR_RS26455 0.47 +1.6
80,963 - AZOBR_RS26455 0.47 -3.0
81,499 - -2.3
81,643 - +1.3
81,801 + AZOBR_RS26460 0.48 -3.1
81,802 - AZOBR_RS26460 0.48 -0.0
81,802 - AZOBR_RS26460 0.48 -0.4
81,960 + AZOBR_RS26460 0.73 -0.6
81,961 - +0.3
81,961 - AZOBR_RS26460 0.74 -1.3
81,967 - AZOBR_RS26460 0.75 -2.0
81,967 - AZOBR_RS26460 0.75 -1.2
82,024 + AZOBR_RS26460 0.84 +1.2
82,026 + AZOBR_RS26460 0.84 +0.8
82,298 + +1.5
82,299 - +0.9
82,389 + AZOBR_RS26465 0.13 +0.9
82,390 - AZOBR_RS26465 0.13 +0.9
82,390 - AZOBR_RS26465 0.13 -0.2

Or see this region's nucleotide sequence