Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26385 and AZOBR_RS26390 are separated by 44 nucleotides AZOBR_RS26390 and AZOBR_RS26395 are separated by 90 nucleotides AZOBR_RS26395 and AZOBR_RS26400 are separated by 35 nucleotides
AZOBR_RS26385: AZOBR_RS26385 - transcriptional regulator, at 66,163 to 67,272
_RS26385
AZOBR_RS26390: AZOBR_RS26390 - deacylase, at 67,317 to 68,363
_RS26390
AZOBR_RS26395: AZOBR_RS26395 - endoribonuclease, at 68,454 to 68,798
_RS26395
AZOBR_RS26400: AZOBR_RS26400 - ABC transporter substrate-binding protein, at 68,834 to 69,637
_RS26400
Position (kb) 67
68
69 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 66.846 kb on - strand, within AZOBR_RS26385 at 66.851 kb on + strand, within AZOBR_RS26385 at 67.700 kb on - strand, within AZOBR_RS26390 at 67.700 kb on - strand, within AZOBR_RS26390 at 67.700 kb on - strand, within AZOBR_RS26390 at 67.825 kb on + strand, within AZOBR_RS26390 at 68.182 kb on + strand, within AZOBR_RS26390 at 68.266 kb on + strand at 68.267 kb on - strand at 68.267 kb on - strand at 68.267 kb on - strand at 68.393 kb on + strand at 68.443 kb on + strand at 68.443 kb on + strand at 68.444 kb on - strand at 68.560 kb on + strand, within AZOBR_RS26395 at 68.560 kb on + strand, within AZOBR_RS26395 at 68.835 kb on + strand at 68.835 kb on + strand at 68.910 kb on + strand at 68.998 kb on + strand, within AZOBR_RS26400 at 68.998 kb on + strand, within AZOBR_RS26400 at 68.999 kb on - strand, within AZOBR_RS26400 at 68.999 kb on - strand, within AZOBR_RS26400 at 69.088 kb on - strand, within AZOBR_RS26400 at 69.247 kb on - strand, within AZOBR_RS26400 at 69.247 kb on - strand, within AZOBR_RS26400 at 69.271 kb on - strand, within AZOBR_RS26400 at 69.271 kb on - strand, within AZOBR_RS26400
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 66,846 - AZOBR_RS26385 0.62 -1.3 66,851 + AZOBR_RS26385 0.62 -2.2 67,700 - AZOBR_RS26390 0.37 +0.9 67,700 - AZOBR_RS26390 0.37 -0.0 67,700 - AZOBR_RS26390 0.37 -0.2 67,825 + AZOBR_RS26390 0.49 +1.5 68,182 + AZOBR_RS26390 0.83 +0.4 68,266 + -0.6 68,267 - +0.3 68,267 - +0.1 68,267 - -0.0 68,393 + -0.3 68,443 + -0.1 68,443 + -2.9 68,444 - +1.9 68,560 + AZOBR_RS26395 0.31 -1.6 68,560 + AZOBR_RS26395 0.31 +0.4 68,835 + +0.9 68,835 + -0.3 68,910 + +1.1 68,998 + AZOBR_RS26400 0.20 +0.3 68,998 + AZOBR_RS26400 0.20 +0.4 68,999 - AZOBR_RS26400 0.21 +0.8 68,999 - AZOBR_RS26400 0.21 +1.0 69,088 - AZOBR_RS26400 0.32 -4.7 69,247 - AZOBR_RS26400 0.51 -0.7 69,247 - AZOBR_RS26400 0.51 +0.1 69,271 - AZOBR_RS26400 0.54 -0.3 69,271 - AZOBR_RS26400 0.54 +0.4
Or see this region's nucleotide sequence