Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25925 and AZOBR_RS25930 are separated by 15 nucleotides AZOBR_RS25930 and AZOBR_RS25935 are separated by 22 nucleotides AZOBR_RS25935 and AZOBR_RS25940 are separated by 163 nucleotides
AZOBR_RS25925: AZOBR_RS25925 - type II citrate synthase, at 870,144 to 871,427
_RS25925
AZOBR_RS25930: AZOBR_RS25930 - aldose 1-epimerase, at 871,443 to 872,306
_RS25930
AZOBR_RS25935: AZOBR_RS25935 - antibiotic resistance protein, at 872,329 to 872,976
_RS25935
AZOBR_RS25940: AZOBR_RS25940 - regulator, at 873,140 to 873,547
_RS25940
Position (kb) 871
872
873 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 870.462 kb on + strand, within AZOBR_RS25925 at 870.462 kb on + strand, within AZOBR_RS25925 at 870.463 kb on - strand, within AZOBR_RS25925 at 870.499 kb on - strand, within AZOBR_RS25925 at 870.570 kb on + strand, within AZOBR_RS25925 at 870.570 kb on + strand, within AZOBR_RS25925 at 870.570 kb on + strand, within AZOBR_RS25925 at 870.571 kb on - strand, within AZOBR_RS25925 at 870.663 kb on + strand, within AZOBR_RS25925 at 870.694 kb on - strand, within AZOBR_RS25925 at 870.715 kb on - strand, within AZOBR_RS25925 at 870.732 kb on + strand, within AZOBR_RS25925 at 870.733 kb on - strand, within AZOBR_RS25925 at 870.733 kb on - strand, within AZOBR_RS25925 at 870.733 kb on - strand, within AZOBR_RS25925 at 870.733 kb on - strand, within AZOBR_RS25925 at 871.068 kb on + strand, within AZOBR_RS25925 at 871.068 kb on + strand, within AZOBR_RS25925 at 871.104 kb on + strand, within AZOBR_RS25925 at 871.104 kb on + strand, within AZOBR_RS25925 at 871.105 kb on - strand, within AZOBR_RS25925 at 871.191 kb on + strand, within AZOBR_RS25925 at 871.192 kb on - strand, within AZOBR_RS25925 at 871.192 kb on - strand, within AZOBR_RS25925 at 871.213 kb on - strand, within AZOBR_RS25925 at 871.213 kb on - strand, within AZOBR_RS25925 at 871.231 kb on - strand, within AZOBR_RS25925 at 871.377 kb on + strand at 871.444 kb on + strand at 871.445 kb on - strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.466 kb on + strand at 871.467 kb on - strand at 871.467 kb on - strand at 871.467 kb on - strand at 871.467 kb on - strand at 871.467 kb on - strand at 872.343 kb on - strand at 872.789 kb on + strand, within AZOBR_RS25935 at 873.093 kb on - strand at 873.093 kb on - strand at 873.093 kb on - strand at 873.094 kb on + strand at 873.202 kb on - strand, within AZOBR_RS25940 at 873.205 kb on - strand, within AZOBR_RS25940
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 870,462 + AZOBR_RS25925 0.25 -0.5 870,462 + AZOBR_RS25925 0.25 -0.7 870,463 - AZOBR_RS25925 0.25 -1.1 870,499 - AZOBR_RS25925 0.28 +0.5 870,570 + AZOBR_RS25925 0.33 +0.9 870,570 + AZOBR_RS25925 0.33 +0.4 870,570 + AZOBR_RS25925 0.33 -0.3 870,571 - AZOBR_RS25925 0.33 -2.1 870,663 + AZOBR_RS25925 0.40 -1.0 870,694 - AZOBR_RS25925 0.43 -0.7 870,715 - AZOBR_RS25925 0.44 +1.0 870,732 + AZOBR_RS25925 0.46 -1.2 870,733 - AZOBR_RS25925 0.46 +0.6 870,733 - AZOBR_RS25925 0.46 +1.1 870,733 - AZOBR_RS25925 0.46 +0.0 870,733 - AZOBR_RS25925 0.46 +0.6 871,068 + AZOBR_RS25925 0.72 +0.3 871,068 + AZOBR_RS25925 0.72 -0.5 871,104 + AZOBR_RS25925 0.75 +1.3 871,104 + AZOBR_RS25925 0.75 -2.5 871,105 - AZOBR_RS25925 0.75 +0.3 871,191 + AZOBR_RS25925 0.82 +0.6 871,192 - AZOBR_RS25925 0.82 -0.0 871,192 - AZOBR_RS25925 0.82 +1.1 871,213 - AZOBR_RS25925 0.83 -0.8 871,213 - AZOBR_RS25925 0.83 -3.8 871,231 - AZOBR_RS25925 0.85 -1.0 871,377 + +0.1 871,444 + +0.4 871,445 - -1.1 871,466 + +0.0 871,466 + +0.1 871,466 + +1.4 871,466 + +0.0 871,466 + +0.1 871,466 + +0.4 871,466 + -3.5 871,466 + -1.2 871,466 + +0.2 871,467 - +0.9 871,467 - +0.0 871,467 - +0.3 871,467 - +1.3 871,467 - +1.6 872,343 - +1.7 872,789 + AZOBR_RS25935 0.71 +0.0 873,093 - +0.1 873,093 - +1.1 873,093 - +0.0 873,094 + +0.7 873,202 - AZOBR_RS25940 0.15 -1.0 873,205 - AZOBR_RS25940 0.16 -3.3
Or see this region's nucleotide sequence