Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25905 and AZOBR_RS25910 are separated by 12 nucleotides AZOBR_RS25910 and AZOBR_RS25915 overlap by 11 nucleotides AZOBR_RS25915 and AZOBR_RS25920 are separated by 49 nucleotides AZOBR_RS25920 and AZOBR_RS25925 are separated by 180 nucleotides
AZOBR_RS25905: AZOBR_RS25905 - glycerol kinase, at 866,599 to 868,104
_RS25905
AZOBR_RS25910: AZOBR_RS25910 - oxidoreductase, at 868,117 to 868,890
_RS25910
AZOBR_RS25915: AZOBR_RS25915 - ATPase, at 868,880 to 869,446
_RS25915
AZOBR_RS25920: AZOBR_RS25920 - flavodoxin, at 869,496 to 869,963
_RS25920
AZOBR_RS25925: AZOBR_RS25925 - type II citrate synthase, at 870,144 to 871,427
_RS25925
Position (kb) 868
869
870 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 868.215 kb on - strand, within AZOBR_RS25910 at 868.303 kb on + strand, within AZOBR_RS25910 at 868.303 kb on + strand, within AZOBR_RS25910 at 868.304 kb on - strand, within AZOBR_RS25910 at 868.600 kb on + strand, within AZOBR_RS25910 at 868.600 kb on + strand, within AZOBR_RS25910 at 868.840 kb on + strand at 868.972 kb on - strand, within AZOBR_RS25915 at 868.987 kb on - strand, within AZOBR_RS25915 at 869.470 kb on + strand at 869.471 kb on - strand at 869.694 kb on + strand, within AZOBR_RS25920 at 869.694 kb on + strand, within AZOBR_RS25920 at 869.694 kb on + strand, within AZOBR_RS25920 at 869.694 kb on + strand, within AZOBR_RS25920 at 869.696 kb on + strand, within AZOBR_RS25920 at 869.696 kb on + strand, within AZOBR_RS25920 at 869.696 kb on + strand, within AZOBR_RS25920 at 869.696 kb on + strand, within AZOBR_RS25920 at 869.697 kb on - strand, within AZOBR_RS25920 at 869.697 kb on - strand, within AZOBR_RS25920 at 869.697 kb on - strand, within AZOBR_RS25920 at 869.697 kb on - strand, within AZOBR_RS25920 at 869.733 kb on + strand, within AZOBR_RS25920 at 869.733 kb on + strand, within AZOBR_RS25920 at 869.734 kb on - strand, within AZOBR_RS25920 at 869.734 kb on - strand, within AZOBR_RS25920 at 869.736 kb on + strand, within AZOBR_RS25920 at 869.736 kb on + strand, within AZOBR_RS25920 at 869.736 kb on + strand, within AZOBR_RS25920 at 869.737 kb on - strand, within AZOBR_RS25920 at 869.737 kb on - strand, within AZOBR_RS25920 at 869.769 kb on + strand, within AZOBR_RS25920 at 869.970 kb on - strand at 869.990 kb on + strand at 870.003 kb on - strand at 870.003 kb on - strand at 870.024 kb on + strand at 870.024 kb on + strand at 870.025 kb on - strand at 870.025 kb on - strand at 870.025 kb on - strand at 870.034 kb on + strand at 870.034 kb on + strand at 870.035 kb on - strand at 870.075 kb on - strand at 870.238 kb on - strand at 870.275 kb on + strand, within AZOBR_RS25925 at 870.276 kb on - strand, within AZOBR_RS25925 at 870.276 kb on - strand, within AZOBR_RS25925 at 870.276 kb on - strand, within AZOBR_RS25925 at 870.309 kb on + strand, within AZOBR_RS25925 at 870.310 kb on - strand, within AZOBR_RS25925 at 870.381 kb on + strand, within AZOBR_RS25925
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 868,215 - AZOBR_RS25910 0.13 -2.2 868,303 + AZOBR_RS25910 0.24 -0.8 868,303 + AZOBR_RS25910 0.24 -1.5 868,304 - AZOBR_RS25910 0.24 -1.3 868,600 + AZOBR_RS25910 0.62 -4.3 868,600 + AZOBR_RS25910 0.62 -1.8 868,840 + +0.2 868,972 - AZOBR_RS25915 0.16 -0.7 868,987 - AZOBR_RS25915 0.19 +0.4 869,470 + -2.3 869,471 - +0.9 869,694 + AZOBR_RS25920 0.42 +0.3 869,694 + AZOBR_RS25920 0.42 +1.0 869,694 + AZOBR_RS25920 0.42 +0.3 869,694 + AZOBR_RS25920 0.42 +0.4 869,696 + AZOBR_RS25920 0.43 -0.0 869,696 + AZOBR_RS25920 0.43 -0.2 869,696 + AZOBR_RS25920 0.43 +0.3 869,696 + AZOBR_RS25920 0.43 -2.3 869,697 - AZOBR_RS25920 0.43 -0.5 869,697 - AZOBR_RS25920 0.43 -4.3 869,697 - AZOBR_RS25920 0.43 -2.4 869,697 - AZOBR_RS25920 0.43 -0.5 869,733 + AZOBR_RS25920 0.51 +0.6 869,733 + AZOBR_RS25920 0.51 -0.5 869,734 - AZOBR_RS25920 0.51 +0.3 869,734 - AZOBR_RS25920 0.51 +0.6 869,736 + AZOBR_RS25920 0.51 +0.4 869,736 + AZOBR_RS25920 0.51 +0.9 869,736 + AZOBR_RS25920 0.51 +1.2 869,737 - AZOBR_RS25920 0.51 -0.2 869,737 - AZOBR_RS25920 0.51 +0.1 869,769 + AZOBR_RS25920 0.58 +0.5 869,970 - -1.3 869,990 + +1.8 870,003 - +0.5 870,003 - +0.0 870,024 + +0.1 870,024 + -0.1 870,025 - -1.1 870,025 - -1.8 870,025 - +1.1 870,034 + -0.8 870,034 + +1.4 870,035 - +0.5 870,075 - -1.6 870,238 - +1.1 870,275 + AZOBR_RS25925 0.10 -1.0 870,276 - AZOBR_RS25925 0.10 -2.2 870,276 - AZOBR_RS25925 0.10 -1.3 870,276 - AZOBR_RS25925 0.10 +1.0 870,309 + AZOBR_RS25925 0.13 -0.3 870,310 - AZOBR_RS25925 0.13 +0.9 870,381 + AZOBR_RS25925 0.18 -0.0
Or see this region's nucleotide sequence