Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25670 and AZOBR_RS25675 are separated by 12 nucleotides AZOBR_RS25675 and AZOBR_RS25680 are separated by 129 nucleotides
AZOBR_RS25670: AZOBR_RS25670 - long-chain fatty acid--CoA ligase, at 806,535 to 809,945
_RS25670
AZOBR_RS25675: AZOBR_RS25675 - O-methyltransferase, at 809,958 to 810,551
_RS25675
AZOBR_RS25680: AZOBR_RS25680 - hypothetical protein, at 810,681 to 811,502
_RS25680
Position (kb) 809
810
811 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 809.122 kb on - strand, within AZOBR_RS25670 at 809.163 kb on + strand, within AZOBR_RS25670 at 809.304 kb on + strand, within AZOBR_RS25670 at 809.305 kb on - strand, within AZOBR_RS25670 at 809.340 kb on + strand, within AZOBR_RS25670 at 809.508 kb on + strand, within AZOBR_RS25670 at 809.509 kb on - strand, within AZOBR_RS25670 at 809.509 kb on - strand, within AZOBR_RS25670 at 809.893 kb on - strand at 810.044 kb on - strand, within AZOBR_RS25675 at 810.502 kb on + strand at 810.503 kb on - strand at 810.503 kb on - strand at 810.503 kb on - strand at 810.503 kb on - strand at 810.743 kb on - strand at 810.743 kb on - strand at 810.751 kb on + strand at 810.802 kb on + strand, within AZOBR_RS25680 at 810.802 kb on + strand, within AZOBR_RS25680 at 811.283 kb on + strand, within AZOBR_RS25680 at 811.283 kb on + strand, within AZOBR_RS25680 at 811.284 kb on - strand, within AZOBR_RS25680 at 811.284 kb on - strand, within AZOBR_RS25680 at 811.321 kb on + strand, within AZOBR_RS25680 at 811.321 kb on + strand, within AZOBR_RS25680 at 811.322 kb on - strand, within AZOBR_RS25680
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 809,122 - AZOBR_RS25670 0.76 -0.1 809,163 + AZOBR_RS25670 0.77 -0.6 809,304 + AZOBR_RS25670 0.81 -0.8 809,305 - AZOBR_RS25670 0.81 -0.5 809,340 + AZOBR_RS25670 0.82 +0.7 809,508 + AZOBR_RS25670 0.87 +0.0 809,509 - AZOBR_RS25670 0.87 +0.1 809,509 - AZOBR_RS25670 0.87 -0.1 809,893 - -0.1 810,044 - AZOBR_RS25675 0.14 +2.1 810,502 + +0.3 810,503 - +1.5 810,503 - +1.7 810,503 - -0.1 810,503 - +0.5 810,743 - -0.0 810,743 - +0.2 810,751 + -0.1 810,802 + AZOBR_RS25680 0.15 -0.7 810,802 + AZOBR_RS25680 0.15 +1.2 811,283 + AZOBR_RS25680 0.73 -1.0 811,283 + AZOBR_RS25680 0.73 -1.8 811,284 - AZOBR_RS25680 0.73 -1.2 811,284 - AZOBR_RS25680 0.73 -2.8 811,321 + AZOBR_RS25680 0.78 -1.5 811,321 + AZOBR_RS25680 0.78 -1.0 811,322 - AZOBR_RS25680 0.78 -0.3
Or see this region's nucleotide sequence