Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25480 and AZOBR_RS25485 are separated by 6 nucleotides AZOBR_RS25485 and AZOBR_RS25490 are separated by 13 nucleotides AZOBR_RS25490 and AZOBR_RS25495 are separated by 21 nucleotides AZOBR_RS25495 and AZOBR_RS25500 are separated by 62 nucleotides AZOBR_RS25500 and AZOBR_RS25505 are separated by 100 nucleotides
AZOBR_RS25480: AZOBR_RS25480 - sugar ABC transporter ATPase, at 769,877 to 770,647
_RS25480
AZOBR_RS25485: AZOBR_RS25485 - amino acid ABC transporter ATPase, at 770,654 to 771,370
_RS25485
AZOBR_RS25490: AZOBR_RS25490 - putative Extracellular ligand-binding receptor, at 771,384 to 772,502
_RS25490
AZOBR_RS25495: AZOBR_RS25495 - hypothetical protein, at 772,524 to 772,847
_RS25495
AZOBR_RS25500: AZOBR_RS25500 - hypothetical protein, at 772,910 to 773,264
_RS25500
AZOBR_RS25505: AZOBR_RS25505 - hypothetical protein, at 773,365 to 773,919
_RS25505
Position (kb) 771
772
773 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 770.633 kb on + strand at 770.633 kb on + strand at 770.685 kb on - strand at 770.685 kb on - strand at 770.685 kb on - strand at 770.685 kb on - strand at 770.999 kb on + strand, within AZOBR_RS25485 at 771.000 kb on - strand, within AZOBR_RS25485 at 771.260 kb on + strand, within AZOBR_RS25485 at 771.261 kb on - strand, within AZOBR_RS25485 at 771.261 kb on - strand, within AZOBR_RS25485 at 771.261 kb on - strand, within AZOBR_RS25485 at 771.261 kb on - strand, within AZOBR_RS25485 at 771.261 kb on - strand, within AZOBR_RS25485 at 771.261 kb on - strand, within AZOBR_RS25485 at 771.338 kb on + strand at 771.338 kb on + strand at 771.655 kb on - strand, within AZOBR_RS25490 at 771.900 kb on + strand, within AZOBR_RS25490 at 771.901 kb on - strand, within AZOBR_RS25490 at 771.901 kb on - strand, within AZOBR_RS25490 at 772.251 kb on + strand, within AZOBR_RS25490 at 772.300 kb on - strand, within AZOBR_RS25490 at 772.300 kb on - strand, within AZOBR_RS25490 at 772.351 kb on - strand, within AZOBR_RS25490 at 772.452 kb on + strand at 772.453 kb on - strand at 772.453 kb on - strand at 773.034 kb on + strand, within AZOBR_RS25500 at 773.034 kb on + strand, within AZOBR_RS25500 at 773.184 kb on - strand, within AZOBR_RS25500
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 770,633 + +0.7 770,633 + -0.7 770,685 - +3.7 770,685 - -3.2 770,685 - +1.4 770,685 - -2.9 770,999 + AZOBR_RS25485 0.48 -4.5 771,000 - AZOBR_RS25485 0.48 -1.2 771,260 + AZOBR_RS25485 0.85 -2.4 771,261 - AZOBR_RS25485 0.85 +0.5 771,261 - AZOBR_RS25485 0.85 -4.8 771,261 - AZOBR_RS25485 0.85 -1.0 771,261 - AZOBR_RS25485 0.85 +0.4 771,261 - AZOBR_RS25485 0.85 +0.8 771,261 - AZOBR_RS25485 0.85 +0.4 771,338 + -0.0 771,338 + +1.1 771,655 - AZOBR_RS25490 0.24 -1.0 771,900 + AZOBR_RS25490 0.46 +0.5 771,901 - AZOBR_RS25490 0.46 +0.2 771,901 - AZOBR_RS25490 0.46 +0.6 772,251 + AZOBR_RS25490 0.77 +0.3 772,300 - AZOBR_RS25490 0.82 +0.8 772,300 - AZOBR_RS25490 0.82 +0.4 772,351 - AZOBR_RS25490 0.86 +0.6 772,452 + -0.9 772,453 - -0.1 772,453 - -0.1 773,034 + AZOBR_RS25500 0.35 +0.7 773,034 + AZOBR_RS25500 0.35 -1.5 773,184 - AZOBR_RS25500 0.77 +0.2
Or see this region's nucleotide sequence