Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24475 and AZOBR_RS24480 are separated by 34 nucleotides AZOBR_RS24480 and AZOBR_RS24485 are separated by 5 nucleotides AZOBR_RS24485 and AZOBR_RS24490 are separated by 83 nucleotides
AZOBR_RS24475: AZOBR_RS24475 - hypothetical protein, at 552,450 to 553,451
_RS24475
AZOBR_RS24480: AZOBR_RS24480 - putative histidine biosynthesis protein, at 553,486 to 554,193
_RS24480
AZOBR_RS24485: AZOBR_RS24485 - aldehyde-activating protein, at 554,199 to 554,720
_RS24485
AZOBR_RS24490: AZOBR_RS24490 - hypothetical protein, at 554,804 to 555,649
_RS24490
Position (kb) 553
554
555 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 552.823 kb on - strand, within AZOBR_RS24475 at 552.823 kb on - strand, within AZOBR_RS24475 at 553.257 kb on + strand, within AZOBR_RS24475 at 553.257 kb on + strand, within AZOBR_RS24475 at 553.258 kb on - strand, within AZOBR_RS24475 at 553.258 kb on - strand, within AZOBR_RS24475 at 553.258 kb on - strand, within AZOBR_RS24475 at 553.258 kb on - strand, within AZOBR_RS24475 at 553.651 kb on + strand, within AZOBR_RS24480 at 554.191 kb on + strand at 554.191 kb on + strand at 554.303 kb on - strand, within AZOBR_RS24485 at 554.303 kb on - strand, within AZOBR_RS24485 at 554.308 kb on + strand, within AZOBR_RS24485 at 554.308 kb on + strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.309 kb on - strand, within AZOBR_RS24485 at 554.739 kb on + strand at 554.740 kb on - strand at 554.740 kb on - strand at 554.881 kb on - strand at 554.881 kb on - strand at 554.881 kb on - strand at 554.881 kb on - strand at 554.979 kb on - strand, within AZOBR_RS24490 at 555.052 kb on - strand, within AZOBR_RS24490 at 555.052 kb on - strand, within AZOBR_RS24490 at 555.150 kb on + strand, within AZOBR_RS24490 at 555.151 kb on - strand, within AZOBR_RS24490
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 552,823 - AZOBR_RS24475 0.37 -2.3 552,823 - AZOBR_RS24475 0.37 -0.9 553,257 + AZOBR_RS24475 0.81 +1.3 553,257 + AZOBR_RS24475 0.81 -3.4 553,258 - AZOBR_RS24475 0.81 +0.2 553,258 - AZOBR_RS24475 0.81 -1.6 553,258 - AZOBR_RS24475 0.81 -2.7 553,258 - AZOBR_RS24475 0.81 +0.5 553,651 + AZOBR_RS24480 0.23 -1.0 554,191 + +0.4 554,191 + -3.7 554,303 - AZOBR_RS24485 0.20 +0.3 554,303 - AZOBR_RS24485 0.20 -4.5 554,308 + AZOBR_RS24485 0.21 -0.1 554,308 + AZOBR_RS24485 0.21 -2.9 554,309 - AZOBR_RS24485 0.21 -0.0 554,309 - AZOBR_RS24485 0.21 -2.8 554,309 - AZOBR_RS24485 0.21 +0.4 554,309 - AZOBR_RS24485 0.21 +1.2 554,309 - AZOBR_RS24485 0.21 -3.6 554,739 + -1.3 554,740 - +0.9 554,740 - +0.3 554,881 - +0.2 554,881 - +0.9 554,881 - -1.6 554,881 - +0.3 554,979 - AZOBR_RS24490 0.21 +0.6 555,052 - AZOBR_RS24490 0.29 -0.9 555,052 - AZOBR_RS24490 0.29 +0.7 555,150 + AZOBR_RS24490 0.41 -0.7 555,151 - AZOBR_RS24490 0.41 -3.8
Or see this region's nucleotide sequence