Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23880 and AZOBR_RS23885 are separated by 274 nucleotides AZOBR_RS23885 and AZOBR_RS23890 are separated by 8 nucleotides
AZOBR_RS23880: AZOBR_RS23880 - hydrolase, at 388,874 to 389,503
_RS23880
AZOBR_RS23885: AZOBR_RS23885 - multidrug ABC transporter ATP-binding protein, at 389,778 to 390,704
_RS23885
AZOBR_RS23890: AZOBR_RS23890 - sugar ABC transporter permease, at 390,713 to 391,474
_RS23890
Position (kb) 389
390
391 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 388.784 kb on + strand at 388.784 kb on + strand at 388.785 kb on - strand at 388.785 kb on - strand at 388.790 kb on + strand at 388.791 kb on - strand at 388.791 kb on - strand at 389.193 kb on + strand, within AZOBR_RS23880 at 389.193 kb on + strand, within AZOBR_RS23880 at 389.193 kb on + strand, within AZOBR_RS23880 at 389.194 kb on - strand, within AZOBR_RS23880 at 389.194 kb on - strand, within AZOBR_RS23880 at 389.582 kb on + strand at 389.582 kb on + strand at 389.583 kb on - strand at 389.583 kb on - strand at 389.585 kb on + strand at 389.586 kb on - strand at 389.729 kb on + strand at 389.817 kb on + strand at 389.817 kb on + strand at 389.817 kb on + strand at 389.818 kb on - strand at 390.354 kb on + strand, within AZOBR_RS23885 at 390.354 kb on + strand, within AZOBR_RS23885 at 390.355 kb on - strand, within AZOBR_RS23885 at 390.355 kb on - strand, within AZOBR_RS23885 at 390.355 kb on - strand, within AZOBR_RS23885 at 390.355 kb on - strand, within AZOBR_RS23885 at 390.558 kb on + strand, within AZOBR_RS23885 at 390.559 kb on - strand, within AZOBR_RS23885 at 390.740 kb on + strand at 390.740 kb on + strand at 390.740 kb on + strand at 390.741 kb on - strand at 390.741 kb on - strand at 390.741 kb on - strand at 390.741 kb on - strand at 390.875 kb on + strand, within AZOBR_RS23890 at 390.875 kb on + strand, within AZOBR_RS23890 at 390.875 kb on + strand, within AZOBR_RS23890 at 390.876 kb on - strand, within AZOBR_RS23890 at 390.876 kb on - strand, within AZOBR_RS23890 at 390.953 kb on + strand, within AZOBR_RS23890 at 390.954 kb on - strand, within AZOBR_RS23890 at 390.954 kb on - strand, within AZOBR_RS23890 at 390.954 kb on - strand, within AZOBR_RS23890 at 390.954 kb on - strand, within AZOBR_RS23890 at 390.954 kb on - strand, within AZOBR_RS23890 at 390.954 kb on - strand, within AZOBR_RS23890 at 390.980 kb on + strand, within AZOBR_RS23890 at 390.980 kb on + strand, within AZOBR_RS23890 at 390.980 kb on + strand, within AZOBR_RS23890 at 390.981 kb on - strand, within AZOBR_RS23890 at 391.028 kb on + strand, within AZOBR_RS23890 at 391.268 kb on + strand, within AZOBR_RS23890 at 391.328 kb on + strand, within AZOBR_RS23890 at 391.328 kb on + strand, within AZOBR_RS23890 at 391.329 kb on - strand, within AZOBR_RS23890 at 391.329 kb on - strand, within AZOBR_RS23890 at 391.358 kb on + strand, within AZOBR_RS23890 at 391.358 kb on + strand, within AZOBR_RS23890 at 391.457 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 388,784 + +0.2 388,784 + +1.4 388,785 - -1.2 388,785 - +0.3 388,790 + +0.2 388,791 - +1.7 388,791 - -2.6 389,193 + AZOBR_RS23880 0.51 -1.1 389,193 + AZOBR_RS23880 0.51 -3.8 389,193 + AZOBR_RS23880 0.51 +0.4 389,194 - AZOBR_RS23880 0.51 +0.2 389,194 - AZOBR_RS23880 0.51 -0.4 389,582 + +0.3 389,582 + -3.6 389,583 - +0.0 389,583 - +0.2 389,585 + +1.2 389,586 - -1.1 389,729 + -0.3 389,817 + +4.2 389,817 + +0.1 389,817 + +1.6 389,818 - -0.3 390,354 + AZOBR_RS23885 0.62 +0.3 390,354 + AZOBR_RS23885 0.62 +1.1 390,355 - AZOBR_RS23885 0.62 -3.1 390,355 - AZOBR_RS23885 0.62 -3.3 390,355 - AZOBR_RS23885 0.62 +0.0 390,355 - AZOBR_RS23885 0.62 -2.0 390,558 + AZOBR_RS23885 0.84 -0.0 390,559 - AZOBR_RS23885 0.84 -0.4 390,740 + -0.4 390,740 + -0.0 390,740 + -2.0 390,741 - +2.1 390,741 - -0.7 390,741 - -0.6 390,741 - -0.1 390,875 + AZOBR_RS23890 0.21 -2.9 390,875 + AZOBR_RS23890 0.21 +1.9 390,875 + AZOBR_RS23890 0.21 -1.2 390,876 - AZOBR_RS23890 0.21 +0.0 390,876 - AZOBR_RS23890 0.21 -4.3 390,953 + AZOBR_RS23890 0.31 -0.0 390,954 - AZOBR_RS23890 0.32 -0.8 390,954 - AZOBR_RS23890 0.32 -1.3 390,954 - AZOBR_RS23890 0.32 -0.8 390,954 - AZOBR_RS23890 0.32 -0.3 390,954 - AZOBR_RS23890 0.32 -0.5 390,954 - AZOBR_RS23890 0.32 +0.3 390,980 + AZOBR_RS23890 0.35 -2.8 390,980 + AZOBR_RS23890 0.35 +0.7 390,980 + AZOBR_RS23890 0.35 -0.7 390,981 - AZOBR_RS23890 0.35 -1.5 391,028 + AZOBR_RS23890 0.41 -0.2 391,268 + AZOBR_RS23890 0.73 -0.8 391,328 + AZOBR_RS23890 0.81 -3.2 391,328 + AZOBR_RS23890 0.81 +0.7 391,329 - AZOBR_RS23890 0.81 +1.0 391,329 - AZOBR_RS23890 0.81 +0.6 391,358 + AZOBR_RS23890 0.85 -1.4 391,358 + AZOBR_RS23890 0.85 -1.1 391,457 + -0.2
Or see this region's nucleotide sequence