Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23755 and AZOBR_RS23760 are separated by 10 nucleotides AZOBR_RS23760 and AZOBR_RS23765 are separated by 131 nucleotides AZOBR_RS23765 and AZOBR_RS23770 are separated by 152 nucleotides
AZOBR_RS23755: AZOBR_RS23755 - multidrug transporter AcrB, at 360,166 to 363,387
_RS23755
AZOBR_RS23760: AZOBR_RS23760 - RND transporter, at 363,398 to 364,447
_RS23760
AZOBR_RS23765: AZOBR_RS23765 - sulfurtransferase, at 364,579 to 364,782
_RS23765
AZOBR_RS23770: AZOBR_RS23770 - hypothetical protein, at 364,935 to 366,740
_RS23770
Position (kb) 363
364
365 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 362.774 kb on + strand, within AZOBR_RS23755 at 363.131 kb on + strand at 363.131 kb on + strand at 363.131 kb on + strand at 363.131 kb on + strand at 363.132 kb on - strand at 363.132 kb on - strand at 363.621 kb on + strand, within AZOBR_RS23760 at 363.708 kb on + strand, within AZOBR_RS23760 at 363.709 kb on - strand, within AZOBR_RS23760 at 363.709 kb on - strand, within AZOBR_RS23760 at 363.709 kb on - strand, within AZOBR_RS23760 at 363.855 kb on + strand, within AZOBR_RS23760 at 363.855 kb on + strand, within AZOBR_RS23760 at 363.855 kb on + strand, within AZOBR_RS23760 at 363.855 kb on + strand, within AZOBR_RS23760 at 363.855 kb on + strand, within AZOBR_RS23760 at 363.855 kb on + strand, within AZOBR_RS23760 at 363.855 kb on + strand, within AZOBR_RS23760 at 363.855 kb on + strand, within AZOBR_RS23760 at 363.855 kb on + strand, within AZOBR_RS23760 at 363.855 kb on + strand, within AZOBR_RS23760 at 363.856 kb on - strand, within AZOBR_RS23760 at 363.856 kb on - strand, within AZOBR_RS23760 at 363.856 kb on - strand, within AZOBR_RS23760 at 363.856 kb on - strand, within AZOBR_RS23760 at 363.856 kb on - strand, within AZOBR_RS23760 at 363.856 kb on - strand, within AZOBR_RS23760 at 364.817 kb on + strand at 364.817 kb on + strand at 364.825 kb on + strand at 364.825 kb on + strand at 364.825 kb on + strand at 364.825 kb on + strand at 364.825 kb on + strand at 364.826 kb on - strand at 364.826 kb on - strand at 364.826 kb on - strand at 364.826 kb on - strand at 364.826 kb on - strand at 364.826 kb on - strand at 364.826 kb on - strand at 364.826 kb on - strand at 364.998 kb on + strand at 365.163 kb on + strand, within AZOBR_RS23770 at 365.163 kb on + strand, within AZOBR_RS23770 at 365.163 kb on + strand, within AZOBR_RS23770 at 365.163 kb on + strand, within AZOBR_RS23770 at 365.164 kb on - strand, within AZOBR_RS23770 at 365.164 kb on - strand, within AZOBR_RS23770 at 365.164 kb on - strand, within AZOBR_RS23770 at 365.164 kb on - strand, within AZOBR_RS23770 at 365.395 kb on - strand, within AZOBR_RS23770
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 362,774 + AZOBR_RS23755 0.81 +1.0 363,131 + +1.5 363,131 + -4.6 363,131 + +0.5 363,131 + +0.6 363,132 - -3.1 363,132 - +0.0 363,621 + AZOBR_RS23760 0.21 -1.2 363,708 + AZOBR_RS23760 0.30 +1.1 363,709 - AZOBR_RS23760 0.30 +1.1 363,709 - AZOBR_RS23760 0.30 -0.6 363,709 - AZOBR_RS23760 0.30 +0.6 363,855 + AZOBR_RS23760 0.44 +3.2 363,855 + AZOBR_RS23760 0.44 +1.6 363,855 + AZOBR_RS23760 0.44 +0.0 363,855 + AZOBR_RS23760 0.44 -5.0 363,855 + AZOBR_RS23760 0.44 -0.1 363,855 + AZOBR_RS23760 0.44 +0.2 363,855 + AZOBR_RS23760 0.44 +1.5 363,855 + AZOBR_RS23760 0.44 -0.0 363,855 + AZOBR_RS23760 0.44 +0.5 363,855 + AZOBR_RS23760 0.44 -3.0 363,856 - AZOBR_RS23760 0.44 +0.7 363,856 - AZOBR_RS23760 0.44 +1.3 363,856 - AZOBR_RS23760 0.44 -1.8 363,856 - AZOBR_RS23760 0.44 +0.1 363,856 - AZOBR_RS23760 0.44 -0.1 363,856 - AZOBR_RS23760 0.44 +0.9 364,817 + +0.3 364,817 + -3.6 364,825 + -0.4 364,825 + +0.7 364,825 + -5.0 364,825 + -0.4 364,825 + -3.7 364,826 - -2.1 364,826 - +0.5 364,826 - +0.2 364,826 - +2.9 364,826 - -0.6 364,826 - +1.2 364,826 - -0.5 364,826 - -2.5 364,998 + -3.4 365,163 + AZOBR_RS23770 0.13 -0.1 365,163 + AZOBR_RS23770 0.13 +1.4 365,163 + AZOBR_RS23770 0.13 +0.2 365,163 + AZOBR_RS23770 0.13 +1.5 365,164 - AZOBR_RS23770 0.13 -1.8 365,164 - AZOBR_RS23770 0.13 -1.8 365,164 - AZOBR_RS23770 0.13 -2.1 365,164 - AZOBR_RS23770 0.13 -0.5 365,395 - AZOBR_RS23770 0.25 +0.0
Or see this region's nucleotide sequence