Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23515 and AZOBR_RS23520 are separated by 31 nucleotides AZOBR_RS23520 and AZOBR_RS23525 are separated by 4 nucleotides AZOBR_RS23525 and AZOBR_RS23530 are separated by 13 nucleotides
AZOBR_RS23515: AZOBR_RS23515 - ABC transporter permease, at 305,137 to 305,799
_RS23515
AZOBR_RS23520: AZOBR_RS23520 - ABC transporter permease, at 305,831 to 306,493
_RS23520
AZOBR_RS23525: AZOBR_RS23525 - ABC transporter ATP-binding protein, at 306,498 to 307,307
_RS23525
AZOBR_RS23530: AZOBR_RS23530 - putative Major facilitator family transporter, at 307,321 to 308,514
_RS23530
Position (kb) 306
307
308 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 305.618 kb on - strand, within AZOBR_RS23515 at 305.618 kb on - strand, within AZOBR_RS23515 at 305.987 kb on + strand, within AZOBR_RS23520 at 305.987 kb on + strand, within AZOBR_RS23520 at 305.988 kb on - strand, within AZOBR_RS23520 at 305.988 kb on - strand, within AZOBR_RS23520 at 305.988 kb on - strand, within AZOBR_RS23520 at 306.006 kb on - strand, within AZOBR_RS23520 at 306.125 kb on + strand, within AZOBR_RS23520 at 306.125 kb on + strand, within AZOBR_RS23520 at 306.125 kb on + strand, within AZOBR_RS23520 at 306.125 kb on + strand, within AZOBR_RS23520 at 306.126 kb on - strand, within AZOBR_RS23520 at 306.126 kb on - strand, within AZOBR_RS23520 at 306.126 kb on - strand, within AZOBR_RS23520 at 306.137 kb on + strand, within AZOBR_RS23520 at 306.137 kb on + strand, within AZOBR_RS23520 at 306.137 kb on + strand, within AZOBR_RS23520 at 306.137 kb on + strand, within AZOBR_RS23520 at 306.138 kb on - strand, within AZOBR_RS23520 at 306.219 kb on - strand, within AZOBR_RS23520 at 306.398 kb on + strand, within AZOBR_RS23520 at 306.399 kb on - strand, within AZOBR_RS23520 at 306.419 kb on + strand, within AZOBR_RS23520 at 306.419 kb on + strand, within AZOBR_RS23520 at 306.419 kb on + strand, within AZOBR_RS23520 at 306.420 kb on - strand, within AZOBR_RS23520 at 306.420 kb on - strand, within AZOBR_RS23520 at 306.420 kb on - strand, within AZOBR_RS23520 at 306.420 kb on - strand, within AZOBR_RS23520 at 306.492 kb on - strand at 306.519 kb on + strand at 306.520 kb on - strand at 306.909 kb on + strand, within AZOBR_RS23525 at 307.489 kb on + strand, within AZOBR_RS23530 at 307.490 kb on - strand, within AZOBR_RS23530 at 307.663 kb on + strand, within AZOBR_RS23530 at 307.663 kb on + strand, within AZOBR_RS23530 at 307.663 kb on + strand, within AZOBR_RS23530 at 307.664 kb on - strand, within AZOBR_RS23530 at 307.664 kb on - strand, within AZOBR_RS23530 at 307.664 kb on - strand, within AZOBR_RS23530 at 307.664 kb on - strand, within AZOBR_RS23530 at 307.744 kb on + strand, within AZOBR_RS23530 at 307.744 kb on + strand, within AZOBR_RS23530 at 307.744 kb on + strand, within AZOBR_RS23530 at 307.844 kb on - strand, within AZOBR_RS23530 at 307.927 kb on + strand, within AZOBR_RS23530 at 307.927 kb on + strand, within AZOBR_RS23530 at 307.927 kb on + strand, within AZOBR_RS23530 at 307.927 kb on + strand, within AZOBR_RS23530 at 307.927 kb on + strand, within AZOBR_RS23530 at 307.927 kb on + strand, within AZOBR_RS23530 at 307.928 kb on - strand, within AZOBR_RS23530 at 308.272 kb on + strand, within AZOBR_RS23530 at 308.273 kb on - strand, within AZOBR_RS23530
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 305,618 - AZOBR_RS23515 0.73 -0.4 305,618 - AZOBR_RS23515 0.73 +1.1 305,987 + AZOBR_RS23520 0.24 -0.4 305,987 + AZOBR_RS23520 0.24 +1.0 305,988 - AZOBR_RS23520 0.24 +0.2 305,988 - AZOBR_RS23520 0.24 -1.0 305,988 - AZOBR_RS23520 0.24 -0.1 306,006 - AZOBR_RS23520 0.26 -2.3 306,125 + AZOBR_RS23520 0.44 +0.7 306,125 + AZOBR_RS23520 0.44 -3.6 306,125 + AZOBR_RS23520 0.44 -0.1 306,125 + AZOBR_RS23520 0.44 +0.8 306,126 - AZOBR_RS23520 0.44 +0.3 306,126 - AZOBR_RS23520 0.44 -0.1 306,126 - AZOBR_RS23520 0.44 -0.3 306,137 + AZOBR_RS23520 0.46 +0.2 306,137 + AZOBR_RS23520 0.46 -1.6 306,137 + AZOBR_RS23520 0.46 -0.1 306,137 + AZOBR_RS23520 0.46 +2.3 306,138 - AZOBR_RS23520 0.46 -1.9 306,219 - AZOBR_RS23520 0.59 -4.0 306,398 + AZOBR_RS23520 0.86 +0.9 306,399 - AZOBR_RS23520 0.86 -0.3 306,419 + AZOBR_RS23520 0.89 -0.4 306,419 + AZOBR_RS23520 0.89 -0.4 306,419 + AZOBR_RS23520 0.89 +0.6 306,420 - AZOBR_RS23520 0.89 +0.2 306,420 - AZOBR_RS23520 0.89 +3.6 306,420 - AZOBR_RS23520 0.89 -0.3 306,420 - AZOBR_RS23520 0.89 +1.2 306,492 - +0.1 306,519 + -0.4 306,520 - -0.4 306,909 + AZOBR_RS23525 0.51 -0.4 307,489 + AZOBR_RS23530 0.14 -2.0 307,490 - AZOBR_RS23530 0.14 -0.0 307,663 + AZOBR_RS23530 0.29 -0.1 307,663 + AZOBR_RS23530 0.29 -1.3 307,663 + AZOBR_RS23530 0.29 -0.6 307,664 - AZOBR_RS23530 0.29 -0.4 307,664 - AZOBR_RS23530 0.29 +1.2 307,664 - AZOBR_RS23530 0.29 +0.2 307,664 - AZOBR_RS23530 0.29 +0.0 307,744 + AZOBR_RS23530 0.35 -1.4 307,744 + AZOBR_RS23530 0.35 -3.4 307,744 + AZOBR_RS23530 0.35 +0.4 307,844 - AZOBR_RS23530 0.44 +2.7 307,927 + AZOBR_RS23530 0.51 -0.1 307,927 + AZOBR_RS23530 0.51 +3.9 307,927 + AZOBR_RS23530 0.51 +1.6 307,927 + AZOBR_RS23530 0.51 +0.9 307,927 + AZOBR_RS23530 0.51 -1.0 307,927 + AZOBR_RS23530 0.51 +0.3 307,928 - AZOBR_RS23530 0.51 +0.2 308,272 + AZOBR_RS23530 0.80 -0.5 308,273 - AZOBR_RS23530 0.80 -1.4
Or see this region's nucleotide sequence