Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23330

Experiment: Sisomicin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23325 and AZOBR_RS23330 are separated by 610 nucleotidesAZOBR_RS23330 and AZOBR_RS23335 are separated by 24 nucleotides AZOBR_RS23325: AZOBR_RS23325 - RNA polymerase sigma70, at 258,881 to 259,414 _RS23325 AZOBR_RS23330: AZOBR_RS23330 - hypothetical protein, at 260,025 to 262,013 _RS23330 AZOBR_RS23335: AZOBR_RS23335 - fecR protein, at 262,038 to 263,030 _RS23335 Position (kb) 260 261 262 263Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 259.227 kb on + strand, within AZOBR_RS23325at 259.785 kb on + strandat 259.786 kb on - strandat 259.904 kb on + strandat 260.154 kb on + strandat 260.184 kb on + strandat 260.184 kb on + strandat 260.185 kb on - strandat 260.244 kb on + strand, within AZOBR_RS23330at 260.244 kb on + strand, within AZOBR_RS23330at 260.253 kb on + strand, within AZOBR_RS23330at 260.254 kb on - strand, within AZOBR_RS23330at 260.265 kb on + strand, within AZOBR_RS23330at 260.265 kb on + strand, within AZOBR_RS23330at 260.265 kb on + strand, within AZOBR_RS23330at 260.322 kb on + strand, within AZOBR_RS23330at 260.323 kb on - strand, within AZOBR_RS23330at 260.323 kb on - strand, within AZOBR_RS23330at 260.323 kb on - strand, within AZOBR_RS23330at 260.323 kb on - strand, within AZOBR_RS23330at 260.323 kb on - strand, within AZOBR_RS23330at 260.323 kb on - strand, within AZOBR_RS23330at 260.323 kb on - strand, within AZOBR_RS23330at 260.478 kb on + strand, within AZOBR_RS23330at 260.544 kb on + strand, within AZOBR_RS23330at 260.544 kb on + strand, within AZOBR_RS23330at 260.545 kb on - strand, within AZOBR_RS23330at 260.545 kb on - strand, within AZOBR_RS23330at 260.545 kb on - strand, within AZOBR_RS23330at 260.875 kb on - strand, within AZOBR_RS23330at 261.070 kb on - strand, within AZOBR_RS23330at 261.081 kb on + strand, within AZOBR_RS23330at 261.082 kb on - strand, within AZOBR_RS23330at 261.141 kb on + strand, within AZOBR_RS23330at 261.142 kb on - strand, within AZOBR_RS23330at 261.297 kb on + strand, within AZOBR_RS23330at 261.298 kb on - strand, within AZOBR_RS23330at 261.324 kb on + strand, within AZOBR_RS23330at 261.325 kb on - strand, within AZOBR_RS23330at 261.520 kb on - strand, within AZOBR_RS23330at 261.609 kb on + strand, within AZOBR_RS23330at 261.777 kb on + strand, within AZOBR_RS23330at 261.777 kb on + strand, within AZOBR_RS23330at 261.777 kb on + strand, within AZOBR_RS23330at 261.778 kb on - strand, within AZOBR_RS23330at 261.792 kb on + strand, within AZOBR_RS23330at 261.792 kb on + strand, within AZOBR_RS23330at 261.792 kb on + strand, within AZOBR_RS23330at 261.792 kb on + strand, within AZOBR_RS23330at 261.792 kb on + strand, within AZOBR_RS23330at 261.792 kb on + strand, within AZOBR_RS23330at 261.793 kb on - strand, within AZOBR_RS23330at 261.793 kb on - strand, within AZOBR_RS23330at 261.793 kb on - strand, within AZOBR_RS23330at 261.793 kb on - strand, within AZOBR_RS23330at 261.825 kb on + strandat 261.826 kb on - strandat 261.852 kb on + strandat 262.002 kb on + strandat 262.139 kb on - strand, within AZOBR_RS23335at 262.201 kb on + strand, within AZOBR_RS23335at 262.201 kb on + strand, within AZOBR_RS23335at 262.202 kb on - strand, within AZOBR_RS23335at 262.531 kb on + strand, within AZOBR_RS23335at 262.531 kb on + strand, within AZOBR_RS23335at 262.532 kb on - strand, within AZOBR_RS23335at 262.532 kb on - strand, within AZOBR_RS23335at 262.582 kb on + strand, within AZOBR_RS23335at 262.583 kb on - strand, within AZOBR_RS23335

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
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259,227 + AZOBR_RS23325 0.65 +0.5
259,785 + -3.3
259,786 - -0.1
259,904 + -1.0
260,154 + +0.3
260,184 + -0.1
260,184 + -3.2
260,185 - +0.4
260,244 + AZOBR_RS23330 0.11 +0.5
260,244 + AZOBR_RS23330 0.11 +0.9
260,253 + AZOBR_RS23330 0.11 -3.7
260,254 - AZOBR_RS23330 0.12 +1.0
260,265 + AZOBR_RS23330 0.12 -1.3
260,265 + AZOBR_RS23330 0.12 -1.6
260,265 + AZOBR_RS23330 0.12 +0.4
260,322 + AZOBR_RS23330 0.15 -2.5
260,323 - AZOBR_RS23330 0.15 +1.2
260,323 - AZOBR_RS23330 0.15 +0.7
260,323 - AZOBR_RS23330 0.15 +2.0
260,323 - AZOBR_RS23330 0.15 +3.5
260,323 - AZOBR_RS23330 0.15 +0.8
260,323 - AZOBR_RS23330 0.15 -4.7
260,323 - AZOBR_RS23330 0.15 +0.2
260,478 + AZOBR_RS23330 0.23 -4.4
260,544 + AZOBR_RS23330 0.26 +1.0
260,544 + AZOBR_RS23330 0.26 +0.4
260,545 - AZOBR_RS23330 0.26 +0.6
260,545 - AZOBR_RS23330 0.26 +0.4
260,545 - AZOBR_RS23330 0.26 -0.9
260,875 - AZOBR_RS23330 0.43 +0.2
261,070 - AZOBR_RS23330 0.53 -0.0
261,081 + AZOBR_RS23330 0.53 +0.3
261,082 - AZOBR_RS23330 0.53 +0.3
261,141 + AZOBR_RS23330 0.56 -0.2
261,142 - AZOBR_RS23330 0.56 -1.0
261,297 + AZOBR_RS23330 0.64 +0.2
261,298 - AZOBR_RS23330 0.64 -3.7
261,324 + AZOBR_RS23330 0.65 +1.6
261,325 - AZOBR_RS23330 0.65 -3.5
261,520 - AZOBR_RS23330 0.75 -0.3
261,609 + AZOBR_RS23330 0.80 -3.9
261,777 + AZOBR_RS23330 0.88 -2.0
261,777 + AZOBR_RS23330 0.88 -0.3
261,777 + AZOBR_RS23330 0.88 -1.1
261,778 - AZOBR_RS23330 0.88 +0.0
261,792 + AZOBR_RS23330 0.89 +1.1
261,792 + AZOBR_RS23330 0.89 -0.7
261,792 + AZOBR_RS23330 0.89 +0.9
261,792 + AZOBR_RS23330 0.89 -0.1
261,792 + AZOBR_RS23330 0.89 -1.3
261,792 + AZOBR_RS23330 0.89 -0.6
261,793 - AZOBR_RS23330 0.89 +1.0
261,793 - AZOBR_RS23330 0.89 +0.6
261,793 - AZOBR_RS23330 0.89 +0.1
261,793 - AZOBR_RS23330 0.89 +2.2
261,825 + +0.5
261,826 - +1.1
261,852 + -3.3
262,002 + -4.4
262,139 - AZOBR_RS23335 0.10 +0.1
262,201 + AZOBR_RS23335 0.16 +0.2
262,201 + AZOBR_RS23335 0.16 +0.5
262,202 - AZOBR_RS23335 0.17 -0.5
262,531 + AZOBR_RS23335 0.50 -1.4
262,531 + AZOBR_RS23335 0.50 +0.2
262,532 - AZOBR_RS23335 0.50 -0.1
262,532 - AZOBR_RS23335 0.50 -0.4
262,582 + AZOBR_RS23335 0.55 -0.8
262,583 - AZOBR_RS23335 0.55 -1.5

Or see this region's nucleotide sequence