Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22170

Experiment: Sisomicin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22165 and AZOBR_RS22170 are separated by 839 nucleotidesAZOBR_RS22170 and AZOBR_RS22175 overlap by 4 nucleotidesAZOBR_RS22175 and AZOBR_RS22180 overlap by 4 nucleotidesAZOBR_RS22180 and AZOBR_RS22185 are separated by 148 nucleotides AZOBR_RS22165: AZOBR_RS22165 - peptidylprolyl isomerase, at 1,746,671 to 1,747,222 _RS22165 AZOBR_RS22170: AZOBR_RS22170 - hypothetical protein, at 1,748,062 to 1,748,901 _RS22170 AZOBR_RS22175: AZOBR_RS22175 - hypothetical protein, at 1,748,898 to 1,749,152 _RS22175 AZOBR_RS22180: AZOBR_RS22180 - hypothetical protein, at 1,749,149 to 1,749,484 _RS22180 AZOBR_RS22185: AZOBR_RS22185 - hypothetical protein, at 1,749,633 to 1,751,510 _RS22185 Position (kb) 1748 1749Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1747.125 kb on + strand, within AZOBR_RS22165at 1747.125 kb on + strand, within AZOBR_RS22165at 1747.126 kb on - strand, within AZOBR_RS22165at 1747.126 kb on - strand, within AZOBR_RS22165at 1747.126 kb on - strand, within AZOBR_RS22165at 1747.392 kb on + strandat 1747.393 kb on - strandat 1747.393 kb on - strandat 1748.311 kb on + strand, within AZOBR_RS22170at 1748.677 kb on + strand, within AZOBR_RS22170at 1748.677 kb on + strand, within AZOBR_RS22170at 1748.678 kb on - strand, within AZOBR_RS22170at 1748.678 kb on - strand, within AZOBR_RS22170at 1748.764 kb on + strand, within AZOBR_RS22170at 1748.764 kb on + strand, within AZOBR_RS22170at 1748.765 kb on - strand, within AZOBR_RS22170at 1748.765 kb on - strand, within AZOBR_RS22170at 1748.765 kb on - strand, within AZOBR_RS22170at 1749.449 kb on + strand, within AZOBR_RS22180at 1749.449 kb on + strand, within AZOBR_RS22180at 1749.449 kb on + strand, within AZOBR_RS22180at 1749.449 kb on + strand, within AZOBR_RS22180at 1749.450 kb on - strand, within AZOBR_RS22180at 1749.450 kb on - strand, within AZOBR_RS22180at 1749.482 kb on + strandat 1749.482 kb on + strandat 1749.483 kb on - strandat 1749.483 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
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1,747,125 + AZOBR_RS22165 0.82 +0.8
1,747,125 + AZOBR_RS22165 0.82 +0.6
1,747,126 - AZOBR_RS22165 0.82 +0.8
1,747,126 - AZOBR_RS22165 0.82 -0.1
1,747,126 - AZOBR_RS22165 0.82 +0.6
1,747,392 + +1.4
1,747,393 - -0.0
1,747,393 - -0.1
1,748,311 + AZOBR_RS22170 0.30 -0.9
1,748,677 + AZOBR_RS22170 0.73 -0.4
1,748,677 + AZOBR_RS22170 0.73 -0.3
1,748,678 - AZOBR_RS22170 0.73 -1.5
1,748,678 - AZOBR_RS22170 0.73 -1.8
1,748,764 + AZOBR_RS22170 0.84 -2.1
1,748,764 + AZOBR_RS22170 0.84 -0.1
1,748,765 - AZOBR_RS22170 0.84 +0.3
1,748,765 - AZOBR_RS22170 0.84 -1.8
1,748,765 - AZOBR_RS22170 0.84 +1.1
1,749,449 + AZOBR_RS22180 0.89 -0.4
1,749,449 + AZOBR_RS22180 0.89 -0.4
1,749,449 + AZOBR_RS22180 0.89 +0.3
1,749,449 + AZOBR_RS22180 0.89 +0.4
1,749,450 - AZOBR_RS22180 0.90 +1.0
1,749,450 - AZOBR_RS22180 0.90 +0.4
1,749,482 + -0.6
1,749,482 + -3.9
1,749,483 - +0.8
1,749,483 - -4.6

Or see this region's nucleotide sequence