Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21780

Experiment: Sisomicin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21775 and AZOBR_RS21780 are separated by 23 nucleotidesAZOBR_RS21780 and AZOBR_RS21785 are separated by 25 nucleotidesAZOBR_RS21785 and AZOBR_RS21790 are separated by 292 nucleotides AZOBR_RS21775: AZOBR_RS21775 - peptide ABC transporter ATP-binding protein, at 1,660,899 to 1,661,888 _RS21775 AZOBR_RS21780: AZOBR_RS21780 - peptide ABC transporter ATP-binding protein, at 1,661,912 to 1,662,892 _RS21780 AZOBR_RS21785: AZOBR_RS21785 - hypothetical protein, at 1,662,918 to 1,663,097 _RS21785 AZOBR_RS21790: AZOBR_RS21790 - hemerythrin, at 1,663,390 to 1,663,800 _RS21790 Position (kb) 1661 1662 1663Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1661.580 kb on + strand, within AZOBR_RS21775at 1661.581 kb on - strand, within AZOBR_RS21775at 1661.581 kb on - strand, within AZOBR_RS21775at 1661.644 kb on - strand, within AZOBR_RS21775at 1661.844 kb on + strandat 1661.963 kb on + strandat 1661.964 kb on - strandat 1661.964 kb on - strandat 1663.030 kb on + strand, within AZOBR_RS21785at 1663.031 kb on - strand, within AZOBR_RS21785at 1663.140 kb on - strandat 1663.140 kb on - strandat 1663.550 kb on - strand, within AZOBR_RS21790at 1663.766 kb on - strandat 1663.799 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
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1,661,580 + AZOBR_RS21775 0.69 +0.7
1,661,581 - AZOBR_RS21775 0.69 +0.2
1,661,581 - AZOBR_RS21775 0.69 +1.0
1,661,644 - AZOBR_RS21775 0.75 +0.8
1,661,844 + -1.2
1,661,963 + +1.1
1,661,964 - +0.9
1,661,964 - -3.4
1,663,030 + AZOBR_RS21785 0.62 +1.0
1,663,031 - AZOBR_RS21785 0.63 -0.9
1,663,140 - +4.1
1,663,140 - -0.1
1,663,550 - AZOBR_RS21790 0.39 -2.8
1,663,766 - +0.3
1,663,799 - +0.4

Or see this region's nucleotide sequence