Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS20080 and AZOBR_RS20085 overlap by 4 nucleotides AZOBR_RS20085 and AZOBR_RS20090 are separated by 48 nucleotides AZOBR_RS20090 and AZOBR_RS20095 are separated by 54 nucleotides AZOBR_RS20095 and AZOBR_RS20100 overlap by 4 nucleotides AZOBR_RS20100 and AZOBR_RS20105 are separated by 14 nucleotides
AZOBR_RS20080: AZOBR_RS20080 - ATPase, at 1,269,459 to 1,272,224
_RS20080
AZOBR_RS20085: AZOBR_RS20085 - chemotaxis protein CheW, at 1,272,221 to 1,272,721
_RS20085
AZOBR_RS20090: AZOBR_RS20090 - chemotaxis protein CheY, at 1,272,770 to 1,273,135
_RS20090
AZOBR_RS20095: AZOBR_RS20095 - chemotaxis protein CheY, at 1,273,190 to 1,274,374
_RS20095
AZOBR_RS20100: AZOBR_RS20100 - chemotaxis protein CheR, at 1,274,371 to 1,275,216
_RS20100
AZOBR_RS20105: AZOBR_RS20105 - transcriptional regulator, at 1,275,231 to 1,276,136
_RS20105
Position (kb) 1273
1274
1275 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1272.296 kb on + strand, within AZOBR_RS20085 at 1272.296 kb on + strand, within AZOBR_RS20085 at 1272.296 kb on + strand, within AZOBR_RS20085 at 1272.297 kb on - strand, within AZOBR_RS20085 at 1272.297 kb on - strand, within AZOBR_RS20085 at 1272.534 kb on - strand, within AZOBR_RS20085 at 1273.070 kb on + strand, within AZOBR_RS20090 at 1273.070 kb on + strand, within AZOBR_RS20090 at 1273.071 kb on - strand, within AZOBR_RS20090 at 1273.071 kb on - strand, within AZOBR_RS20090 at 1273.568 kb on + strand, within AZOBR_RS20095 at 1273.568 kb on + strand, within AZOBR_RS20095 at 1273.569 kb on - strand, within AZOBR_RS20095 at 1273.569 kb on - strand, within AZOBR_RS20095 at 1273.569 kb on - strand, within AZOBR_RS20095 at 1274.009 kb on + strand, within AZOBR_RS20095 at 1274.009 kb on + strand, within AZOBR_RS20095 at 1274.009 kb on + strand, within AZOBR_RS20095 at 1274.009 kb on + strand, within AZOBR_RS20095 at 1274.010 kb on - strand, within AZOBR_RS20095 at 1274.010 kb on - strand, within AZOBR_RS20095 at 1274.342 kb on + strand at 1274.342 kb on + strand at 1274.342 kb on + strand at 1274.343 kb on - strand at 1274.449 kb on + strand at 1274.450 kb on - strand at 1274.450 kb on - strand at 1274.450 kb on - strand at 1274.719 kb on + strand, within AZOBR_RS20100 at 1274.719 kb on + strand, within AZOBR_RS20100 at 1274.720 kb on - strand, within AZOBR_RS20100 at 1274.833 kb on + strand, within AZOBR_RS20100 at 1274.833 kb on + strand, within AZOBR_RS20100 at 1274.833 kb on + strand, within AZOBR_RS20100 at 1274.834 kb on - strand, within AZOBR_RS20100 at 1275.094 kb on + strand, within AZOBR_RS20100 at 1275.095 kb on - strand, within AZOBR_RS20100 at 1275.095 kb on - strand, within AZOBR_RS20100 at 1275.167 kb on - strand at 1275.338 kb on - strand, within AZOBR_RS20105
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 1,272,296 + AZOBR_RS20085 0.15 +0.5 1,272,296 + AZOBR_RS20085 0.15 -0.2 1,272,296 + AZOBR_RS20085 0.15 +0.7 1,272,297 - AZOBR_RS20085 0.15 +0.6 1,272,297 - AZOBR_RS20085 0.15 +0.7 1,272,534 - AZOBR_RS20085 0.62 +0.3 1,273,070 + AZOBR_RS20090 0.82 -2.5 1,273,070 + AZOBR_RS20090 0.82 -2.9 1,273,071 - AZOBR_RS20090 0.82 -1.0 1,273,071 - AZOBR_RS20090 0.82 -0.8 1,273,568 + AZOBR_RS20095 0.32 -0.4 1,273,568 + AZOBR_RS20095 0.32 +0.5 1,273,569 - AZOBR_RS20095 0.32 +1.1 1,273,569 - AZOBR_RS20095 0.32 -1.2 1,273,569 - AZOBR_RS20095 0.32 -4.0 1,274,009 + AZOBR_RS20095 0.69 -1.8 1,274,009 + AZOBR_RS20095 0.69 -0.3 1,274,009 + AZOBR_RS20095 0.69 -0.9 1,274,009 + AZOBR_RS20095 0.69 -0.0 1,274,010 - AZOBR_RS20095 0.69 -0.6 1,274,010 - AZOBR_RS20095 0.69 +2.2 1,274,342 + +0.5 1,274,342 + -0.6 1,274,342 + +1.1 1,274,343 - -1.3 1,274,449 + +0.4 1,274,450 - -0.8 1,274,450 - -0.4 1,274,450 - -0.4 1,274,719 + AZOBR_RS20100 0.41 -0.2 1,274,719 + AZOBR_RS20100 0.41 -2.6 1,274,720 - AZOBR_RS20100 0.41 +1.0 1,274,833 + AZOBR_RS20100 0.55 -0.2 1,274,833 + AZOBR_RS20100 0.55 -2.4 1,274,833 + AZOBR_RS20100 0.55 -0.6 1,274,834 - AZOBR_RS20100 0.55 +0.2 1,275,094 + AZOBR_RS20100 0.85 +1.0 1,275,095 - AZOBR_RS20100 0.86 -3.6 1,275,095 - AZOBR_RS20100 0.86 -0.6 1,275,167 - +1.0 1,275,338 - AZOBR_RS20105 0.12 +0.6
Or see this region's nucleotide sequence