Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS19415 and AZOBR_RS19420 are separated by 3 nucleotides AZOBR_RS19420 and AZOBR_RS19425 are separated by 18 nucleotides AZOBR_RS19425 and AZOBR_RS19430 are separated by 209 nucleotides AZOBR_RS19430 and AZOBR_RS19435 are separated by 12 nucleotides AZOBR_RS19435 and AZOBR_RS19440 are separated by 15 nucleotides
AZOBR_RS19415: AZOBR_RS19415 - glycosyltransferase, at 1,132,297 to 1,132,596
_RS19415
AZOBR_RS19420: AZOBR_RS19420 - hypothetical protein, at 1,132,600 to 1,132,854
_RS19420
AZOBR_RS19425: AZOBR_RS19425 - phosphoglyceromutase, at 1,132,873 to 1,133,634
_RS19425
AZOBR_RS19430: AZOBR_RS19430 - hypothetical protein, at 1,133,844 to 1,134,140
_RS19430
AZOBR_RS19435: AZOBR_RS19435 - hypothetical protein, at 1,134,153 to 1,134,494
_RS19435
AZOBR_RS19440: AZOBR_RS19440 - hypothetical protein, at 1,134,510 to 1,134,707
_RS19440
Position (kb) 1132
1133
1134 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1131.938 kb on - strand at 1131.938 kb on - strand at 1132.872 kb on - strand at 1132.874 kb on + strand at 1132.875 kb on - strand at 1132.875 kb on - strand at 1132.958 kb on + strand, within AZOBR_RS19425 at 1132.994 kb on + strand, within AZOBR_RS19425 at 1132.995 kb on - strand, within AZOBR_RS19425 at 1132.995 kb on - strand, within AZOBR_RS19425 at 1133.367 kb on - strand, within AZOBR_RS19425 at 1133.728 kb on + strand at 1133.728 kb on + strand at 1133.729 kb on - strand at 1133.941 kb on - strand, within AZOBR_RS19430 at 1134.351 kb on - strand, within AZOBR_RS19435
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 1,131,938 - -0.0 1,131,938 - +1.4 1,132,872 - +0.0 1,132,874 + -2.8 1,132,875 - +0.3 1,132,875 - +0.8 1,132,958 + AZOBR_RS19425 0.11 -0.3 1,132,994 + AZOBR_RS19425 0.16 -1.0 1,132,995 - AZOBR_RS19425 0.16 -0.6 1,132,995 - AZOBR_RS19425 0.16 +0.2 1,133,367 - AZOBR_RS19425 0.65 -0.4 1,133,728 + -0.5 1,133,728 + +0.4 1,133,729 - -0.2 1,133,941 - AZOBR_RS19430 0.33 -3.2 1,134,351 - AZOBR_RS19435 0.58 +1.1
Or see this region's nucleotide sequence