Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18495 and AZOBR_RS18500 overlap by 1 nucleotides AZOBR_RS18500 and AZOBR_RS18505 are separated by 410 nucleotides
AZOBR_RS18495: AZOBR_RS18495 - metallophosphatase, at 915,457 to 916,713
_RS18495
AZOBR_RS18500: AZOBR_RS18500 - hypothetical protein, at 916,713 to 920,411
_RS18500
AZOBR_RS18505: AZOBR_RS18505 - hypothetical protein, at 920,822 to 921,049
_RS18505
Position (kb) 916
917
918
919
920
921 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 915.883 kb on + strand, within AZOBR_RS18495 at 915.971 kb on - strand, within AZOBR_RS18495 at 915.971 kb on - strand, within AZOBR_RS18495 at 916.042 kb on + strand, within AZOBR_RS18495 at 916.042 kb on + strand, within AZOBR_RS18495 at 916.042 kb on + strand, within AZOBR_RS18495 at 916.141 kb on + strand, within AZOBR_RS18495 at 916.141 kb on + strand, within AZOBR_RS18495 at 916.141 kb on + strand, within AZOBR_RS18495 at 916.142 kb on - strand, within AZOBR_RS18495 at 916.142 kb on - strand, within AZOBR_RS18495 at 916.142 kb on - strand, within AZOBR_RS18495 at 916.202 kb on - strand, within AZOBR_RS18495 at 916.243 kb on + strand, within AZOBR_RS18495 at 916.290 kb on + strand, within AZOBR_RS18495 at 916.290 kb on + strand, within AZOBR_RS18495 at 916.290 kb on + strand, within AZOBR_RS18495 at 916.291 kb on - strand, within AZOBR_RS18495 at 916.291 kb on - strand at 916.291 kb on - strand, within AZOBR_RS18495 at 916.432 kb on + strand, within AZOBR_RS18495 at 916.432 kb on + strand, within AZOBR_RS18495 at 916.433 kb on - strand, within AZOBR_RS18495 at 916.433 kb on - strand, within AZOBR_RS18495 at 916.433 kb on - strand, within AZOBR_RS18495 at 916.433 kb on - strand, within AZOBR_RS18495 at 916.433 kb on - strand, within AZOBR_RS18495 at 916.436 kb on + strand, within AZOBR_RS18495 at 916.436 kb on + strand, within AZOBR_RS18495 at 916.437 kb on - strand, within AZOBR_RS18495 at 916.437 kb on - strand, within AZOBR_RS18495 at 916.437 kb on - strand, within AZOBR_RS18495 at 916.437 kb on - strand, within AZOBR_RS18495 at 916.437 kb on - strand, within AZOBR_RS18495 at 917.304 kb on + strand, within AZOBR_RS18500 at 917.304 kb on + strand, within AZOBR_RS18500 at 917.304 kb on + strand, within AZOBR_RS18500 at 917.305 kb on - strand, within AZOBR_RS18500 at 919.435 kb on - strand, within AZOBR_RS18500 at 920.219 kb on + strand at 920.478 kb on + strand at 920.478 kb on + strand at 920.479 kb on - strand at 920.575 kb on + strand at 920.575 kb on + strand at 920.613 kb on + strand at 920.613 kb on + strand at 920.613 kb on + strand at 920.614 kb on - strand at 920.614 kb on - strand at 920.614 kb on - strand at 920.614 kb on - strand at 920.614 kb on - strand at 920.614 kb on - strand at 920.614 kb on - strand at 920.614 kb on - strand at 921.036 kb on + strand at 921.036 kb on + strand at 921.036 kb on + strand at 921.036 kb on - strand at 921.037 kb on - strand at 921.037 kb on - strand at 921.037 kb on - strand at 921.069 kb on + strand at 921.070 kb on - strand at 921.070 kb on - strand at 921.159 kb on + strand at 921.159 kb on + strand at 921.159 kb on + strand at 921.160 kb on - strand at 921.160 kb on - strand at 921.160 kb on - strand at 921.160 kb on - strand at 921.160 kb on - strand at 921.160 kb on - strand at 921.160 kb on - strand at 921.196 kb on - strand at 921.196 kb on - strand at 921.196 kb on - strand at 921.196 kb on - strand at 921.273 kb on + strand at 921.273 kb on + strand at 921.273 kb on + strand at 921.273 kb on + strand at 921.274 kb on - strand at 921.274 kb on - strand at 921.276 kb on + strand at 921.277 kb on - strand at 921.277 kb on - strand at 921.277 kb on - strand at 921.277 kb on - strand at 921.327 kb on + strand at 921.327 kb on + strand at 921.328 kb on - strand at 921.328 kb on - strand at 921.328 kb on - strand at 921.328 kb on - strand at 921.328 kb on - strand at 921.328 kb on - strand at 921.330 kb on + strand at 921.330 kb on + strand at 921.331 kb on - strand at 921.331 kb on - strand at 921.390 kb on + strand at 921.391 kb on - strand at 921.391 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 915,883 + AZOBR_RS18495 0.34 +0.4 915,971 - AZOBR_RS18495 0.41 +1.0 915,971 - AZOBR_RS18495 0.41 +1.0 916,042 + AZOBR_RS18495 0.47 +0.1 916,042 + AZOBR_RS18495 0.47 -1.4 916,042 + AZOBR_RS18495 0.47 -3.3 916,141 + AZOBR_RS18495 0.54 +0.9 916,141 + AZOBR_RS18495 0.54 -1.3 916,141 + AZOBR_RS18495 0.54 -0.0 916,142 - AZOBR_RS18495 0.54 -0.3 916,142 - AZOBR_RS18495 0.54 -0.9 916,142 - AZOBR_RS18495 0.54 -0.1 916,202 - AZOBR_RS18495 0.59 +0.6 916,243 + AZOBR_RS18495 0.63 +0.5 916,290 + AZOBR_RS18495 0.66 +0.7 916,290 + AZOBR_RS18495 0.66 -1.3 916,290 + AZOBR_RS18495 0.66 +0.4 916,291 - AZOBR_RS18495 0.66 +0.7 916,291 - +1.0 916,291 - AZOBR_RS18495 0.66 +1.5 916,432 + AZOBR_RS18495 0.78 +1.8 916,432 + AZOBR_RS18495 0.78 -0.3 916,433 - AZOBR_RS18495 0.78 +0.6 916,433 - AZOBR_RS18495 0.78 +2.0 916,433 - AZOBR_RS18495 0.78 +0.1 916,433 - AZOBR_RS18495 0.78 +1.4 916,433 - AZOBR_RS18495 0.78 +0.4 916,436 + AZOBR_RS18495 0.78 -1.3 916,436 + AZOBR_RS18495 0.78 -0.2 916,437 - AZOBR_RS18495 0.78 +0.6 916,437 - AZOBR_RS18495 0.78 -2.7 916,437 - AZOBR_RS18495 0.78 -0.3 916,437 - AZOBR_RS18495 0.78 -0.7 916,437 - AZOBR_RS18495 0.78 -0.1 917,304 + AZOBR_RS18500 0.16 -0.0 917,304 + AZOBR_RS18500 0.16 -2.3 917,304 + AZOBR_RS18500 0.16 -1.2 917,305 - AZOBR_RS18500 0.16 -0.5 919,435 - AZOBR_RS18500 0.74 -0.3 920,219 + -0.2 920,478 + +0.7 920,478 + +0.2 920,479 - -0.0 920,575 + -0.8 920,575 + -2.2 920,613 + +0.7 920,613 + +1.0 920,613 + +0.0 920,614 - -1.3 920,614 - +1.0 920,614 - -2.7 920,614 - -1.6 920,614 - -2.2 920,614 - -0.2 920,614 - +1.4 920,614 - -0.4 921,036 + +1.4 921,036 + -1.0 921,036 + +0.7 921,036 - -0.1 921,037 - -3.7 921,037 - -2.9 921,037 - -0.4 921,069 + -0.7 921,070 - -0.7 921,070 - -0.2 921,159 + -0.6 921,159 + +1.0 921,159 + -3.3 921,160 - -1.0 921,160 - -1.4 921,160 - -3.3 921,160 - +0.7 921,160 - +0.3 921,160 - -0.2 921,160 - -2.7 921,196 - -2.7 921,196 - -0.7 921,196 - -0.8 921,196 - -1.6 921,273 + -1.8 921,273 + +0.8 921,273 + +0.8 921,273 + +2.6 921,274 - +0.9 921,274 - +0.8 921,276 + -3.5 921,277 - -2.6 921,277 - +0.6 921,277 - +1.0 921,277 - +1.4 921,327 + +1.6 921,327 + +0.0 921,328 - -2.6 921,328 - -2.9 921,328 - -2.5 921,328 - +0.4 921,328 - -0.2 921,328 - -0.2 921,330 + -0.1 921,330 + -0.5 921,331 - -2.2 921,331 - -0.3 921,390 + +1.0 921,391 - +0.7 921,391 - +0.6
Or see this region's nucleotide sequence