Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18415 and AZOBR_RS18420 are separated by 158 nucleotides AZOBR_RS18420 and AZOBR_RS18425 are separated by 89 nucleotides AZOBR_RS18425 and AZOBR_RS18430 are separated by 3 nucleotides
AZOBR_RS18415: AZOBR_RS18415 - formate dehydrogenase accessory protein FdhD, at 897,098 to 897,916
_RS18415
AZOBR_RS18420: AZOBR_RS18420 - formate dehydrogenase-N subunit gamma, at 898,075 to 898,707
_RS18420
AZOBR_RS18425: AZOBR_RS18425 - formate dehydrogenase, at 898,797 to 899,651
_RS18425
AZOBR_RS18430: AZOBR_RS18430 - formate dehydrogenase, at 899,655 to 902,084
_RS18430
Position (kb) 898
899
900 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 897.931 kb on + strand at 897.932 kb on - strand at 898.055 kb on + strand at 898.056 kb on - strand at 898.298 kb on + strand, within AZOBR_RS18420 at 898.834 kb on + strand at 898.834 kb on + strand at 898.834 kb on + strand at 898.835 kb on - strand at 898.984 kb on + strand, within AZOBR_RS18425 at 898.985 kb on - strand, within AZOBR_RS18425 at 898.985 kb on - strand, within AZOBR_RS18425 at 898.985 kb on - strand, within AZOBR_RS18425 at 898.985 kb on - strand, within AZOBR_RS18425 at 899.020 kb on + strand, within AZOBR_RS18425 at 899.021 kb on - strand, within AZOBR_RS18425 at 899.188 kb on + strand, within AZOBR_RS18425 at 899.188 kb on + strand, within AZOBR_RS18425 at 899.188 kb on + strand, within AZOBR_RS18425 at 899.189 kb on - strand, within AZOBR_RS18425 at 899.189 kb on - strand, within AZOBR_RS18425 at 899.189 kb on - strand, within AZOBR_RS18425 at 899.656 kb on + strand at 899.657 kb on - strand at 899.698 kb on + strand at 899.698 kb on + strand at 899.699 kb on - strand at 899.699 kb on - strand at 900.029 kb on - strand, within AZOBR_RS18430 at 900.044 kb on - strand, within AZOBR_RS18430 at 900.163 kb on + strand, within AZOBR_RS18430 at 900.163 kb on + strand, within AZOBR_RS18430 at 900.164 kb on - strand, within AZOBR_RS18430 at 900.164 kb on - strand, within AZOBR_RS18430 at 900.379 kb on + strand, within AZOBR_RS18430
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 897,931 + +1.0 897,932 - +1.0 898,055 + +0.8 898,056 - -0.2 898,298 + AZOBR_RS18420 0.35 +0.0 898,834 + -3.2 898,834 + -0.1 898,834 + -0.1 898,835 - -0.4 898,984 + AZOBR_RS18425 0.22 +1.9 898,985 - AZOBR_RS18425 0.22 +0.8 898,985 - AZOBR_RS18425 0.22 -1.0 898,985 - AZOBR_RS18425 0.22 -1.6 898,985 - AZOBR_RS18425 0.22 -2.8 899,020 + AZOBR_RS18425 0.26 -1.4 899,021 - AZOBR_RS18425 0.26 +0.6 899,188 + AZOBR_RS18425 0.46 +0.9 899,188 + AZOBR_RS18425 0.46 +0.5 899,188 + AZOBR_RS18425 0.46 -1.9 899,189 - AZOBR_RS18425 0.46 -1.5 899,189 - AZOBR_RS18425 0.46 -0.8 899,189 - AZOBR_RS18425 0.46 -1.5 899,656 + -0.7 899,657 - -0.3 899,698 + -3.7 899,698 + -0.7 899,699 - +3.5 899,699 - -0.4 900,029 - AZOBR_RS18430 0.15 -0.1 900,044 - AZOBR_RS18430 0.16 -0.3 900,163 + AZOBR_RS18430 0.21 +1.0 900,163 + AZOBR_RS18430 0.21 +0.9 900,164 - AZOBR_RS18430 0.21 -1.1 900,164 - AZOBR_RS18430 0.21 +0.8 900,379 + AZOBR_RS18430 0.30 -0.4
Or see this region's nucleotide sequence