Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15910 and AZOBR_RS15915 are separated by 164 nucleotides AZOBR_RS15915 and AZOBR_RS15920 are separated by 30 nucleotides
AZOBR_RS15910: AZOBR_RS15910 - hypothetical protein, at 322,747 to 324,030
_RS15910
AZOBR_RS15915: AZOBR_RS15915 - gluconate TRAP transporter, periplasmic solute-binding component <small>(from data)</small>, at 324,195 to 325,208
_RS15915
AZOBR_RS15920: AZOBR_RS15920 - Large component of TRAP-type D-gluconate transporter <small>(from data)</small>, at 325,239 to 326,519
_RS15920
Position (kb) 324
325
326 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 323.215 kb on + strand, within AZOBR_RS15910 at 323.215 kb on + strand, within AZOBR_RS15910 at 323.692 kb on + strand, within AZOBR_RS15910 at 323.788 kb on + strand, within AZOBR_RS15910 at 323.789 kb on - strand, within AZOBR_RS15910 at 323.922 kb on + strand at 324.197 kb on - strand at 324.497 kb on - strand, within AZOBR_RS15915 at 324.520 kb on + strand, within AZOBR_RS15915 at 324.521 kb on - strand, within AZOBR_RS15915 at 324.521 kb on - strand, within AZOBR_RS15915 at 324.535 kb on + strand, within AZOBR_RS15915 at 324.536 kb on - strand, within AZOBR_RS15915 at 324.667 kb on + strand, within AZOBR_RS15915 at 324.668 kb on - strand, within AZOBR_RS15915 at 325.312 kb on + strand at 325.313 kb on - strand at 325.454 kb on - strand, within AZOBR_RS15920 at 325.651 kb on + strand, within AZOBR_RS15920 at 325.652 kb on - strand, within AZOBR_RS15920 at 325.652 kb on - strand, within AZOBR_RS15920 at 325.780 kb on + strand, within AZOBR_RS15920 at 325.781 kb on - strand, within AZOBR_RS15920
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 323,215 + AZOBR_RS15910 0.36 +0.3 323,215 + AZOBR_RS15910 0.36 +0.6 323,692 + AZOBR_RS15910 0.74 -2.8 323,788 + AZOBR_RS15910 0.81 +0.3 323,789 - AZOBR_RS15910 0.81 -3.4 323,922 + -3.3 324,197 - +0.3 324,497 - AZOBR_RS15915 0.30 -3.4 324,520 + AZOBR_RS15915 0.32 -4.2 324,521 - AZOBR_RS15915 0.32 -0.3 324,521 - AZOBR_RS15915 0.32 -0.6 324,535 + AZOBR_RS15915 0.34 +1.3 324,536 - AZOBR_RS15915 0.34 -0.7 324,667 + AZOBR_RS15915 0.47 -0.8 324,668 - AZOBR_RS15915 0.47 +1.5 325,312 + -0.7 325,313 - -2.4 325,454 - AZOBR_RS15920 0.17 -0.9 325,651 + AZOBR_RS15920 0.32 +0.8 325,652 - AZOBR_RS15920 0.32 +0.4 325,652 - AZOBR_RS15920 0.32 -0.1 325,780 + AZOBR_RS15920 0.42 -2.8 325,781 - AZOBR_RS15920 0.42 +0.4
Or see this region's nucleotide sequence