Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15055 and AZOBR_RS15060 overlap by 4 nucleotides AZOBR_RS15060 and AZOBR_RS15065 are separated by 82 nucleotides
AZOBR_RS15055: AZOBR_RS15055 - muraminidase, at 150,914 to 151,360
_RS15055
AZOBR_RS15060: AZOBR_RS15060 - hypothetical protein, at 151,357 to 151,536
_RS15060
AZOBR_RS15065: AZOBR_RS15065 - hypothetical protein, at 151,619 to 154,144
_RS15065
Position (kb) 151
152
153
154
155 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 151.302 kb on + strand, within AZOBR_RS15055 at 151.302 kb on + strand, within AZOBR_RS15055 at 151.541 kb on + strand at 151.541 kb on + strand at 151.541 kb on + strand at 151.541 kb on + strand at 151.541 kb on + strand at 151.541 kb on + strand at 151.542 kb on - strand at 151.542 kb on - strand at 151.542 kb on - strand at 151.542 kb on - strand at 151.542 kb on - strand at 151.716 kb on + strand at 151.717 kb on - strand at 151.746 kb on + strand at 151.747 kb on - strand at 152.027 kb on + strand, within AZOBR_RS15065 at 152.028 kb on - strand, within AZOBR_RS15065 at 152.083 kb on - strand, within AZOBR_RS15065 at 152.130 kb on - strand, within AZOBR_RS15065 at 152.437 kb on - strand, within AZOBR_RS15065 at 152.462 kb on - strand, within AZOBR_RS15065 at 152.511 kb on + strand, within AZOBR_RS15065 at 152.511 kb on + strand, within AZOBR_RS15065 at 152.512 kb on - strand, within AZOBR_RS15065 at 152.573 kb on - strand, within AZOBR_RS15065 at 152.574 kb on + strand, within AZOBR_RS15065 at 152.574 kb on + strand, within AZOBR_RS15065 at 152.574 kb on + strand, within AZOBR_RS15065 at 152.574 kb on + strand, within AZOBR_RS15065 at 152.700 kb on + strand, within AZOBR_RS15065 at 152.700 kb on + strand, within AZOBR_RS15065 at 152.700 kb on + strand, within AZOBR_RS15065 at 152.701 kb on - strand, within AZOBR_RS15065 at 152.701 kb on - strand, within AZOBR_RS15065 at 152.749 kb on - strand, within AZOBR_RS15065 at 152.749 kb on - strand, within AZOBR_RS15065 at 152.764 kb on + strand, within AZOBR_RS15065 at 152.772 kb on + strand, within AZOBR_RS15065 at 152.805 kb on + strand, within AZOBR_RS15065 at 152.806 kb on - strand, within AZOBR_RS15065 at 152.856 kb on + strand, within AZOBR_RS15065 at 152.856 kb on + strand, within AZOBR_RS15065 at 152.856 kb on + strand, within AZOBR_RS15065 at 152.857 kb on - strand, within AZOBR_RS15065 at 152.857 kb on - strand, within AZOBR_RS15065 at 152.857 kb on - strand, within AZOBR_RS15065 at 152.975 kb on - strand, within AZOBR_RS15065 at 152.975 kb on - strand, within AZOBR_RS15065 at 153.360 kb on + strand, within AZOBR_RS15065 at 153.361 kb on - strand, within AZOBR_RS15065 at 153.361 kb on - strand, within AZOBR_RS15065 at 153.363 kb on + strand, within AZOBR_RS15065 at 153.363 kb on + strand, within AZOBR_RS15065 at 153.363 kb on + strand, within AZOBR_RS15065 at 153.364 kb on - strand, within AZOBR_RS15065 at 153.364 kb on - strand, within AZOBR_RS15065 at 153.570 kb on + strand, within AZOBR_RS15065 at 153.571 kb on - strand, within AZOBR_RS15065 at 153.571 kb on - strand, within AZOBR_RS15065 at 153.615 kb on - strand, within AZOBR_RS15065 at 153.615 kb on - strand, within AZOBR_RS15065 at 154.101 kb on + strand at 154.101 kb on + strand at 154.102 kb on - strand at 154.210 kb on + strand at 154.215 kb on - strand at 154.296 kb on + strand at 154.346 kb on - strand at 154.346 kb on - strand at 154.393 kb on + strand at 155.032 kb on - strand at 155.042 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 151,302 + AZOBR_RS15055 0.87 +2.2 151,302 + AZOBR_RS15055 0.87 -1.7 151,541 + -1.4 151,541 + -0.5 151,541 + -1.9 151,541 + -4.7 151,541 + -0.5 151,541 + +0.0 151,542 - +0.8 151,542 - +2.3 151,542 - +0.4 151,542 - -1.6 151,542 - -0.9 151,716 + -0.1 151,717 - -0.3 151,746 + -1.0 151,747 - -0.9 152,027 + AZOBR_RS15065 0.16 -0.2 152,028 - AZOBR_RS15065 0.16 -3.4 152,083 - AZOBR_RS15065 0.18 -2.7 152,130 - AZOBR_RS15065 0.20 -2.2 152,437 - AZOBR_RS15065 0.32 +0.2 152,462 - AZOBR_RS15065 0.33 -4.0 152,511 + AZOBR_RS15065 0.35 -0.6 152,511 + AZOBR_RS15065 0.35 +1.0 152,512 - AZOBR_RS15065 0.35 -0.1 152,573 - AZOBR_RS15065 0.38 +0.3 152,574 + AZOBR_RS15065 0.38 -0.7 152,574 + AZOBR_RS15065 0.38 -0.8 152,574 + AZOBR_RS15065 0.38 -0.9 152,574 + AZOBR_RS15065 0.38 -0.3 152,700 + AZOBR_RS15065 0.43 -0.3 152,700 + AZOBR_RS15065 0.43 +0.1 152,700 + AZOBR_RS15065 0.43 -0.3 152,701 - AZOBR_RS15065 0.43 -0.5 152,701 - AZOBR_RS15065 0.43 +1.0 152,749 - AZOBR_RS15065 0.45 -3.1 152,749 - AZOBR_RS15065 0.45 -0.3 152,764 + AZOBR_RS15065 0.45 -2.4 152,772 + AZOBR_RS15065 0.46 -0.3 152,805 + AZOBR_RS15065 0.47 +0.2 152,806 - AZOBR_RS15065 0.47 +0.1 152,856 + AZOBR_RS15065 0.49 -4.3 152,856 + AZOBR_RS15065 0.49 +0.3 152,856 + AZOBR_RS15065 0.49 +0.5 152,857 - AZOBR_RS15065 0.49 -0.8 152,857 - AZOBR_RS15065 0.49 -0.4 152,857 - AZOBR_RS15065 0.49 -1.1 152,975 - AZOBR_RS15065 0.54 +0.2 152,975 - AZOBR_RS15065 0.54 -1.1 153,360 + AZOBR_RS15065 0.69 -0.9 153,361 - AZOBR_RS15065 0.69 -0.2 153,361 - AZOBR_RS15065 0.69 -0.7 153,363 + AZOBR_RS15065 0.69 -0.0 153,363 + AZOBR_RS15065 0.69 -0.4 153,363 + AZOBR_RS15065 0.69 -0.6 153,364 - AZOBR_RS15065 0.69 -1.1 153,364 - AZOBR_RS15065 0.69 -1.6 153,570 + AZOBR_RS15065 0.77 -1.4 153,571 - AZOBR_RS15065 0.77 -0.5 153,571 - AZOBR_RS15065 0.77 +1.0 153,615 - AZOBR_RS15065 0.79 -0.3 153,615 - AZOBR_RS15065 0.79 -3.0 154,101 + +0.4 154,101 + -0.8 154,102 - -0.7 154,210 + -0.8 154,215 - +0.1 154,296 + +0.7 154,346 - +1.9 154,346 - +0.8 154,393 + +0.3 155,032 - -1.8 155,042 - -0.4
Or see this region's nucleotide sequence