Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS14540 and AZOBR_RS14545 are separated by 37 nucleotides AZOBR_RS14545 and AZOBR_RS14550 are separated by 90 nucleotides AZOBR_RS14550 and AZOBR_RS14555 are separated by 39 nucleotides AZOBR_RS14555 and AZOBR_RS14560 are separated by 39 nucleotides
AZOBR_RS14540: AZOBR_RS14540 - hypothetical protein, at 33,880 to 34,761
_RS14540
AZOBR_RS14545: AZOBR_RS14545 - threonine transporter, at 34,799 to 35,434
_RS14545
AZOBR_RS14550: AZOBR_RS14550 - hypothetical protein, at 35,525 to 35,845
_RS14550
AZOBR_RS14555: AZOBR_RS14555 - hypothetical protein, at 35,885 to 36,196
_RS14555
AZOBR_RS14560: AZOBR_RS14560 - hypothetical protein, at 36,236 to 36,931
_RS14560
Position (kb) 34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 33.836 kb on + strand at 33.837 kb on - strand at 33.849 kb on - strand at 34.072 kb on + strand, within AZOBR_RS14540 at 34.072 kb on + strand, within AZOBR_RS14540 at 34.198 kb on + strand, within AZOBR_RS14540 at 34.198 kb on + strand, within AZOBR_RS14540 at 34.199 kb on - strand, within AZOBR_RS14540 at 34.199 kb on - strand, within AZOBR_RS14540 at 34.426 kb on + strand, within AZOBR_RS14540 at 34.679 kb on - strand at 34.893 kb on + strand, within AZOBR_RS14545 at 34.941 kb on + strand, within AZOBR_RS14545 at 34.942 kb on - strand, within AZOBR_RS14545 at 35.184 kb on + strand, within AZOBR_RS14545 at 35.184 kb on + strand, within AZOBR_RS14545 at 35.184 kb on + strand, within AZOBR_RS14545 at 35.641 kb on - strand, within AZOBR_RS14550 at 35.739 kb on + strand, within AZOBR_RS14550 at 35.739 kb on + strand, within AZOBR_RS14550 at 35.739 kb on + strand, within AZOBR_RS14550
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 33,836 + +2.1 33,837 - +0.9 33,849 - +2.7 34,072 + AZOBR_RS14540 0.22 +0.4 34,072 + AZOBR_RS14540 0.22 +0.4 34,198 + AZOBR_RS14540 0.36 -0.1 34,198 + AZOBR_RS14540 0.36 +0.4 34,199 - AZOBR_RS14540 0.36 +0.4 34,199 - AZOBR_RS14540 0.36 +1.5 34,426 + AZOBR_RS14540 0.62 -0.1 34,679 - +1.3 34,893 + AZOBR_RS14545 0.15 -0.7 34,941 + AZOBR_RS14545 0.22 -0.2 34,942 - AZOBR_RS14545 0.22 -1.8 35,184 + AZOBR_RS14545 0.61 +0.5 35,184 + AZOBR_RS14545 0.61 -2.8 35,184 + AZOBR_RS14545 0.61 -0.2 35,641 - AZOBR_RS14550 0.36 +1.4 35,739 + AZOBR_RS14550 0.67 -0.4 35,739 + AZOBR_RS14550 0.67 +0.2 35,739 + AZOBR_RS14550 0.67 +1.5
Or see this region's nucleotide sequence