Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS14535

Experiment: Sisomicin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS14535 and AZOBR_RS14540 are separated by 310 nucleotides AZOBR_RS14535: AZOBR_RS14535 - RNA-binding protein, at 31,200 to 33,569 _RS14535 AZOBR_RS14540: AZOBR_RS14540 - hypothetical protein, at 33,880 to 34,761 _RS14540 Position (kb) 31 32 33 34Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 30.211 kb on + strandat 30.212 kb on - strandat 30.286 kb on + strandat 30.286 kb on + strandat 30.286 kb on + strandat 30.286 kb on + strandat 30.287 kb on - strandat 30.287 kb on - strandat 30.287 kb on - strandat 30.287 kb on - strandat 30.437 kb on - strandat 30.509 kb on - strandat 30.709 kb on + strandat 30.709 kb on + strandat 31.159 kb on + strandat 31.161 kb on + strandat 31.161 kb on + strandat 31.162 kb on - strandat 31.162 kb on - strandat 31.384 kb on - strandat 31.384 kb on - strandat 31.510 kb on - strand, within AZOBR_RS14535at 31.510 kb on - strand, within AZOBR_RS14535at 31.518 kb on + strand, within AZOBR_RS14535at 32.463 kb on + strand, within AZOBR_RS14535at 32.604 kb on + strand, within AZOBR_RS14535at 33.567 kb on + strandat 33.609 kb on + strandat 33.644 kb on - strandat 33.644 kb on - strandat 33.644 kb on - strandat 33.644 kb on - strandat 33.668 kb on - strandat 33.668 kb on - strandat 33.836 kb on + strandat 33.837 kb on - strandat 33.849 kb on - strandat 34.072 kb on + strand, within AZOBR_RS14540at 34.072 kb on + strand, within AZOBR_RS14540at 34.198 kb on + strand, within AZOBR_RS14540at 34.198 kb on + strand, within AZOBR_RS14540at 34.199 kb on - strand, within AZOBR_RS14540at 34.199 kb on - strand, within AZOBR_RS14540at 34.426 kb on + strand, within AZOBR_RS14540

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
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30,211 + -0.9
30,212 - -0.3
30,286 + +1.0
30,286 + -0.7
30,286 + -0.1
30,286 + +0.3
30,287 - +0.3
30,287 - -3.0
30,287 - +0.1
30,287 - -2.1
30,437 - -0.1
30,509 - +0.8
30,709 + -0.3
30,709 + -0.7
31,159 + +0.3
31,161 + +1.0
31,161 + +0.3
31,162 - -4.0
31,162 - +0.2
31,384 - +0.1
31,384 - -0.1
31,510 - AZOBR_RS14535 0.13 +0.0
31,510 - AZOBR_RS14535 0.13 +0.5
31,518 + AZOBR_RS14535 0.13 -2.3
32,463 + AZOBR_RS14535 0.53 +0.1
32,604 + AZOBR_RS14535 0.59 +0.6
33,567 + +1.5
33,609 + -1.1
33,644 - +1.1
33,644 - -1.5
33,644 - +1.5
33,644 - -0.0
33,668 - +1.3
33,668 - +0.1
33,836 + +2.1
33,837 - +0.9
33,849 - +2.7
34,072 + AZOBR_RS14540 0.22 +0.4
34,072 + AZOBR_RS14540 0.22 +0.4
34,198 + AZOBR_RS14540 0.36 -0.1
34,198 + AZOBR_RS14540 0.36 +0.4
34,199 - AZOBR_RS14540 0.36 +0.4
34,199 - AZOBR_RS14540 0.36 +1.5
34,426 + AZOBR_RS14540 0.62 -0.1

Or see this region's nucleotide sequence