Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS14515 and AZOBR_RS14520 overlap by 4 nucleotides AZOBR_RS14520 and AZOBR_RS14525 are separated by 1 nucleotides
AZOBR_RS14515: AZOBR_RS14515 - oxidoreductase, at 25,685 to 27,142
_RS14515
AZOBR_RS14520: AZOBR_RS14520 - hydrogenase-4 component E, at 27,139 to 27,801
_RS14520
AZOBR_RS14525: AZOBR_RS14525 - formate hydrogenlyase, at 27,803 to 28,720
_RS14525
Position (kb)
27
28
29 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 26.829 kb on + strand, within AZOBR_RS14515 at 26.829 kb on + strand, within AZOBR_RS14515 at 26.829 kb on + strand, within AZOBR_RS14515 at 26.830 kb on - strand, within AZOBR_RS14515 at 26.830 kb on - strand, within AZOBR_RS14515 at 26.830 kb on - strand, within AZOBR_RS14515 at 26.830 kb on - strand, within AZOBR_RS14515 at 26.830 kb on - strand, within AZOBR_RS14515 at 26.830 kb on - strand, within AZOBR_RS14515 at 26.841 kb on + strand, within AZOBR_RS14515 at 26.841 kb on + strand, within AZOBR_RS14515 at 26.842 kb on - strand, within AZOBR_RS14515 at 26.842 kb on - strand, within AZOBR_RS14515 at 26.895 kb on + strand, within AZOBR_RS14515 at 26.896 kb on - strand, within AZOBR_RS14515 at 26.952 kb on + strand, within AZOBR_RS14515 at 26.952 kb on + strand, within AZOBR_RS14515 at 26.952 kb on + strand, within AZOBR_RS14515 at 26.952 kb on + strand, within AZOBR_RS14515 at 26.952 kb on + strand, within AZOBR_RS14515 at 26.953 kb on - strand, within AZOBR_RS14515 at 27.529 kb on + strand, within AZOBR_RS14520 at 27.529 kb on + strand, within AZOBR_RS14520 at 27.530 kb on - strand, within AZOBR_RS14520 at 27.530 kb on - strand, within AZOBR_RS14520 at 27.530 kb on - strand, within AZOBR_RS14520 at 27.623 kb on + strand, within AZOBR_RS14520 at 27.623 kb on + strand, within AZOBR_RS14520 at 27.624 kb on - strand, within AZOBR_RS14520 at 27.624 kb on - strand, within AZOBR_RS14520 at 27.647 kb on + strand, within AZOBR_RS14520 at 27.647 kb on + strand, within AZOBR_RS14520 at 27.648 kb on - strand, within AZOBR_RS14520 at 27.786 kb on - strand at 27.822 kb on + strand at 27.823 kb on - strand at 28.047 kb on + strand, within AZOBR_RS14525 at 28.047 kb on + strand, within AZOBR_RS14525 at 28.047 kb on + strand, within AZOBR_RS14525 at 28.047 kb on + strand, within AZOBR_RS14525 at 28.048 kb on - strand, within AZOBR_RS14525 at 28.048 kb on - strand, within AZOBR_RS14525 at 28.542 kb on + strand, within AZOBR_RS14525 at 28.542 kb on + strand, within AZOBR_RS14525 at 28.543 kb on - strand, within AZOBR_RS14525 at 28.734 kb on + strand at 28.735 kb on - strand at 29.046 kb on - strand at 29.046 kb on - strand at 29.192 kb on + strand at 29.192 kb on + strand at 29.192 kb on + strand at 29.193 kb on - strand at 29.240 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 26,829 + AZOBR_RS14515 0.78 -0.9 26,829 + AZOBR_RS14515 0.78 -1.1 26,829 + AZOBR_RS14515 0.78 +0.3 26,830 - AZOBR_RS14515 0.79 +0.6 26,830 - AZOBR_RS14515 0.79 +0.2 26,830 - AZOBR_RS14515 0.79 -0.8 26,830 - AZOBR_RS14515 0.79 +0.4 26,830 - AZOBR_RS14515 0.79 -1.5 26,830 - AZOBR_RS14515 0.79 -2.8 26,841 + AZOBR_RS14515 0.79 +0.9 26,841 + AZOBR_RS14515 0.79 -0.3 26,842 - AZOBR_RS14515 0.79 +1.8 26,842 - AZOBR_RS14515 0.79 +0.3 26,895 + AZOBR_RS14515 0.83 +1.5 26,896 - AZOBR_RS14515 0.83 +1.4 26,952 + AZOBR_RS14515 0.87 +1.0 26,952 + AZOBR_RS14515 0.87 +0.3 26,952 + AZOBR_RS14515 0.87 +2.4 26,952 + AZOBR_RS14515 0.87 +0.2 26,952 + AZOBR_RS14515 0.87 +0.7 26,953 - AZOBR_RS14515 0.87 +2.0 27,529 + AZOBR_RS14520 0.59 -1.1 27,529 + AZOBR_RS14520 0.59 +0.2 27,530 - AZOBR_RS14520 0.59 -0.1 27,530 - AZOBR_RS14520 0.59 +1.4 27,530 - AZOBR_RS14520 0.59 -0.6 27,623 + AZOBR_RS14520 0.73 -0.7 27,623 + AZOBR_RS14520 0.73 -1.1 27,624 - AZOBR_RS14520 0.73 +0.1 27,624 - AZOBR_RS14520 0.73 +0.4 27,647 + AZOBR_RS14520 0.77 +1.5 27,647 + AZOBR_RS14520 0.77 -0.9 27,648 - AZOBR_RS14520 0.77 +1.4 27,786 - -1.9 27,822 + -1.1 27,823 - +1.4 28,047 + AZOBR_RS14525 0.27 -0.7 28,047 + AZOBR_RS14525 0.27 -3.8 28,047 + AZOBR_RS14525 0.27 +1.5 28,047 + AZOBR_RS14525 0.27 +1.8 28,048 - AZOBR_RS14525 0.27 +0.8 28,048 - AZOBR_RS14525 0.27 -0.8 28,542 + AZOBR_RS14525 0.81 +0.9 28,542 + AZOBR_RS14525 0.81 -0.1 28,543 - AZOBR_RS14525 0.81 -1.2 28,734 + -1.4 28,735 - +1.8 29,046 - -0.1 29,046 - +0.9 29,192 + -0.7 29,192 + -0.1 29,192 + -4.0 29,193 - -2.6 29,240 + +0.2
Or see this region's nucleotide sequence