Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS14080

Experiment: Sisomicin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS14075 and AZOBR_RS14080 are separated by 42 nucleotidesAZOBR_RS14080 and AZOBR_RS14085 are separated by 138 nucleotides AZOBR_RS14075: AZOBR_RS14075 - MFS transporter, at 2,957,766 to 2,960,690 _RS14075 AZOBR_RS14080: AZOBR_RS14080 - dihydrolipoamide succinyltransferase, at 2,960,733 to 2,961,986 _RS14080 AZOBR_RS14085: AZOBR_RS14085 - histidine kinase, at 2,962,125 to 2,963,318 _RS14085 Position (kb) 2960 2961 2962Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2960.706 kb on + strandat 2960.706 kb on + strandat 2960.706 kb on + strandat 2962.205 kb on + strandat 2962.206 kb on - strandat 2962.206 kb on - strandat 2962.206 kb on - strandat 2962.206 kb on - strandat 2962.206 kb on - strandat 2962.206 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
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2,960,706 + -0.8
2,960,706 + +1.6
2,960,706 + -0.4
2,962,205 + -0.3
2,962,206 - -0.3
2,962,206 - -3.1
2,962,206 - -0.1
2,962,206 - -1.2
2,962,206 - +2.3
2,962,206 - -2.0

Or see this region's nucleotide sequence