Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS13075
Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Sisomicin 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,759,367 | - | AZOBR_RS13070 | 0.40 | -1.1 | |
2,759,609 | + | AZOBR_RS13070 | 0.72 | +0.5 | |
2,759,610 | - | AZOBR_RS13070 | 0.72 | -0.2 | |
2,759,889 | + | +0.7 | |||
2,759,889 | + | -0.9 | |||
2,759,889 | + | -0.2 | |||
2,759,889 | + | +0.4 | |||
2,760,030 | + | AZOBR_RS13075 | 0.25 | -0.7 | |
2,760,031 | - | AZOBR_RS13075 | 0.25 | -0.2 | |
2,760,631 | + | -0.1 | |||
2,760,631 | + | +0.3 | |||
2,760,631 | + | +0.1 | |||
2,760,631 | + | +0.1 | |||
2,760,631 | + | -0.2 | |||
2,760,631 | + | +0.1 | |||
2,760,632 | - | -1.4 | |||
2,760,632 | - | +1.1 | |||
2,760,632 | - | +0.7 | |||
2,761,024 | - | -0.3 | |||
2,761,260 | + | AZOBR_RS13080 | 0.28 | -0.4 | |
2,761,260 | + | AZOBR_RS13080 | 0.28 | -1.8 | |
2,761,261 | - | AZOBR_RS13080 | 0.29 | -0.9 | |
2,761,261 | - | AZOBR_RS13080 | 0.29 | +0.1 | |
2,761,404 | + | AZOBR_RS13080 | 0.40 | +0.4 | |
2,761,404 | + | AZOBR_RS13080 | 0.40 | +0.6 | |
2,761,405 | - | AZOBR_RS13080 | 0.40 | +0.7 | |
2,761,405 | - | AZOBR_RS13080 | 0.40 | +0.3 | |
2,761,566 | + | AZOBR_RS13080 | 0.53 | +1.6 | |
2,761,567 | - | AZOBR_RS13080 | 0.53 | -0.9 |
Or see this region's nucleotide sequence