Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS09580 and AZOBR_RS09585 are separated by 519 nucleotides AZOBR_RS09585 and AZOBR_RS09590 are separated by 119 nucleotides AZOBR_RS09590 and AZOBR_RS09595 are separated by 92 nucleotides
AZOBR_RS09580: AZOBR_RS09580 - exported protein of unknown function, at 2,008,560 to 2,009,315
_RS09580
AZOBR_RS09585: AZOBR_RS09585 - hypothetical protein, at 2,009,835 to 2,010,989
_RS09585
AZOBR_RS09590: AZOBR_RS09590 - putative Zn-ribbon-containing protein involved in phosphonate metabolism PhnA-like protein, at 2,011,109 to 2,011,465
_RS09590
AZOBR_RS09595: AZOBR_RS09595 - C4-dicarboxylate ABC transporter permease, at 2,011,558 to 2,012,856
_RS09595
Position (kb)
2009
2010
2011 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2008.953 kb on + strand, within AZOBR_RS09580 at 2009.235 kb on + strand, within AZOBR_RS09580 at 2009.235 kb on + strand, within AZOBR_RS09580 at 2009.235 kb on + strand, within AZOBR_RS09580 at 2009.236 kb on - strand, within AZOBR_RS09580 at 2009.313 kb on + strand at 2009.499 kb on + strand at 2009.500 kb on - strand at 2009.925 kb on + strand at 2009.926 kb on - strand at 2009.926 kb on - strand at 2009.926 kb on - strand at 2010.001 kb on - strand, within AZOBR_RS09585 at 2011.078 kb on + strand at 2011.154 kb on + strand, within AZOBR_RS09590 at 2011.155 kb on - strand, within AZOBR_RS09590 at 2011.559 kb on + strand at 2011.559 kb on + strand at 2011.559 kb on + strand at 2011.559 kb on + strand at 2011.559 kb on + strand at 2011.559 kb on + strand at 2011.559 kb on + strand at 2011.560 kb on - strand at 2011.560 kb on - strand at 2011.560 kb on - strand at 2011.560 kb on - strand at 2011.560 kb on - strand at 2011.560 kb on - strand at 2011.607 kb on + strand at 2011.608 kb on - strand at 2011.608 kb on - strand at 2011.608 kb on - strand at 2011.707 kb on - strand, within AZOBR_RS09595
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 2,008,953 + AZOBR_RS09580 0.52 -0.8 2,009,235 + AZOBR_RS09580 0.89 -0.8 2,009,235 + AZOBR_RS09580 0.89 -0.8 2,009,235 + AZOBR_RS09580 0.89 +0.4 2,009,236 - AZOBR_RS09580 0.89 -0.1 2,009,313 + +0.8 2,009,499 + +0.8 2,009,500 - -3.9 2,009,925 + -0.7 2,009,926 - -0.7 2,009,926 - -0.8 2,009,926 - +0.7 2,010,001 - AZOBR_RS09585 0.14 +0.1 2,011,078 + +0.6 2,011,154 + AZOBR_RS09590 0.13 -4.1 2,011,155 - AZOBR_RS09590 0.13 +2.6 2,011,559 + -3.6 2,011,559 + -4.5 2,011,559 + -0.5 2,011,559 + +0.9 2,011,559 + +0.5 2,011,559 + +0.8 2,011,559 + +1.1 2,011,560 - -4.0 2,011,560 - -1.0 2,011,560 - -3.6 2,011,560 - +0.6 2,011,560 - -3.6 2,011,560 - +0.8 2,011,607 + +0.1 2,011,608 - -3.2 2,011,608 - -1.7 2,011,608 - +2.8 2,011,707 - AZOBR_RS09595 0.11 +0.3
Or see this region's nucleotide sequence