Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07860

Experiment: Sisomicin 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS07855 and AZOBR_RS07860 are separated by 167 nucleotides AZOBR_RS07855: AZOBR_RS07855 - hypothetical protein, at 1,655,378 to 1,656,382 _RS07855 AZOBR_RS07860: AZOBR_RS07860 - hypothetical protein, at 1,656,550 to 1,656,921 _RS07860 Position (kb) 1656 1657Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1655.589 kb on + strand, within AZOBR_RS07855at 1655.589 kb on + strand, within AZOBR_RS07855at 1655.590 kb on - strand, within AZOBR_RS07855at 1655.678 kb on + strand, within AZOBR_RS07855at 1655.678 kb on + strand, within AZOBR_RS07855at 1655.679 kb on - strand, within AZOBR_RS07855at 1655.679 kb on - strand, within AZOBR_RS07855at 1655.679 kb on - strand, within AZOBR_RS07855at 1655.679 kb on - strand, within AZOBR_RS07855at 1655.933 kb on + strand, within AZOBR_RS07855at 1655.933 kb on + strand, within AZOBR_RS07855at 1655.934 kb on - strand, within AZOBR_RS07855at 1655.934 kb on - strand, within AZOBR_RS07855at 1655.976 kb on + strand, within AZOBR_RS07855at 1655.977 kb on - strand, within AZOBR_RS07855at 1656.137 kb on + strand, within AZOBR_RS07855at 1656.137 kb on + strand, within AZOBR_RS07855at 1656.138 kb on - strand, within AZOBR_RS07855at 1656.138 kb on - strand, within AZOBR_RS07855at 1656.318 kb on + strandat 1656.318 kb on + strandat 1656.318 kb on + strandat 1656.318 kb on + strandat 1656.318 kb on + strandat 1656.318 kb on + strandat 1656.319 kb on - strandat 1656.319 kb on - strandat 1656.319 kb on - strandat 1656.380 kb on + strandat 1656.380 kb on + strandat 1656.437 kb on - strandat 1656.513 kb on + strandat 1656.572 kb on + strandat 1656.930 kb on + strandat 1656.931 kb on - strandat 1656.963 kb on + strandat 1656.964 kb on - strandat 1657.218 kb on + strandat 1657.218 kb on + strandat 1657.218 kb on + strandat 1657.219 kb on - strandat 1657.219 kb on - strandat 1657.336 kb on + strandat 1657.511 kb on + strandat 1657.512 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
remove
1,655,589 + AZOBR_RS07855 0.21 -0.8
1,655,589 + AZOBR_RS07855 0.21 -0.3
1,655,590 - AZOBR_RS07855 0.21 +2.7
1,655,678 + AZOBR_RS07855 0.30 +0.2
1,655,678 + AZOBR_RS07855 0.30 +0.9
1,655,679 - AZOBR_RS07855 0.30 +0.2
1,655,679 - AZOBR_RS07855 0.30 +0.2
1,655,679 - AZOBR_RS07855 0.30 +0.6
1,655,679 - AZOBR_RS07855 0.30 +1.8
1,655,933 + AZOBR_RS07855 0.55 -0.2
1,655,933 + AZOBR_RS07855 0.55 +0.1
1,655,934 - AZOBR_RS07855 0.55 -3.1
1,655,934 - AZOBR_RS07855 0.55 +0.1
1,655,976 + AZOBR_RS07855 0.60 +0.5
1,655,977 - AZOBR_RS07855 0.60 +0.3
1,656,137 + AZOBR_RS07855 0.76 +1.0
1,656,137 + AZOBR_RS07855 0.76 -0.5
1,656,138 - AZOBR_RS07855 0.76 +1.6
1,656,138 - AZOBR_RS07855 0.76 +0.7
1,656,318 + +0.2
1,656,318 + +0.7
1,656,318 + -1.2
1,656,318 + -2.6
1,656,318 + -0.6
1,656,318 + +0.8
1,656,319 - -1.6
1,656,319 - +0.7
1,656,319 - -1.2
1,656,380 + -1.2
1,656,380 + -2.8
1,656,437 - -0.1
1,656,513 + -0.0
1,656,572 + -2.9
1,656,930 + -0.9
1,656,931 - -2.7
1,656,963 + -1.4
1,656,964 - +0.7
1,657,218 + -1.0
1,657,218 + +0.6
1,657,218 + +0.1
1,657,219 - -2.0
1,657,219 - -2.4
1,657,336 + -1.1
1,657,511 + +0.7
1,657,512 - -0.1

Or see this region's nucleotide sequence