Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS06140 and AZOBR_RS06145 are separated by 3 nucleotides AZOBR_RS06145 and AZOBR_RS06150 are separated by 120 nucleotides AZOBR_RS06150 and AZOBR_RS06155 are separated by 202 nucleotides
AZOBR_RS06140: AZOBR_RS06140 - phosphoribosylaminoimidazole carboxylase, at 1,302,702 to 1,303,784
_RS06140
AZOBR_RS06145: AZOBR_RS06145 - N5-carboxyaminoimidazole ribonucleotide mutase, at 1,303,788 to 1,304,297
_RS06145
AZOBR_RS06150: AZOBR_RS06150 - small protein containing a coiled-coil domain containing protein, at 1,304,418 to 1,304,618
_RS06150
AZOBR_RS06155: AZOBR_RS06155 - 6-phosphofructokinase, at 1,304,821 to 1,305,906
_RS06155
Position (kb)
1303
1304
1305 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1304.327 kb on - strand at 1304.327 kb on - strand at 1304.441 kb on + strand, within AZOBR_RS06150 at 1304.441 kb on + strand, within AZOBR_RS06150 at 1304.442 kb on - strand, within AZOBR_RS06150 at 1304.442 kb on - strand, within AZOBR_RS06150 at 1304.618 kb on + strand at 1304.618 kb on + strand at 1304.652 kb on + strand at 1304.652 kb on + strand at 1304.706 kb on + strand at 1304.706 kb on + strand at 1304.709 kb on - strand at 1304.709 kb on - strand at 1304.727 kb on + strand at 1304.728 kb on - strand at 1304.730 kb on + strand at 1304.774 kb on + strand at 1304.780 kb on + strand at 1304.780 kb on + strand at 1304.781 kb on - strand at 1304.920 kb on + strand at 1304.920 kb on + strand at 1304.921 kb on - strand at 1304.983 kb on + strand, within AZOBR_RS06155 at 1304.983 kb on + strand, within AZOBR_RS06155
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 1,304,327 - +0.3 1,304,327 - -0.2 1,304,441 + AZOBR_RS06150 0.11 -0.6 1,304,441 + AZOBR_RS06150 0.11 +0.4 1,304,442 - AZOBR_RS06150 0.12 -3.0 1,304,442 - AZOBR_RS06150 0.12 -3.1 1,304,618 + +0.1 1,304,618 + +1.3 1,304,652 + +0.5 1,304,652 + +1.9 1,304,706 + -2.9 1,304,706 + +0.8 1,304,709 - -0.2 1,304,709 - -2.0 1,304,727 + +0.5 1,304,728 - -1.9 1,304,730 + +1.2 1,304,774 + +0.0 1,304,780 + -4.6 1,304,780 + -3.1 1,304,781 - -0.6 1,304,920 + -4.7 1,304,920 + +0.9 1,304,921 - +0.3 1,304,983 + AZOBR_RS06155 0.15 -1.6 1,304,983 + AZOBR_RS06155 0.15 -4.4
Or see this region's nucleotide sequence