Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04265 and AZOBR_RS04270 are separated by 16 nucleotides AZOBR_RS04270 and AZOBR_RS04275 are separated by 53 nucleotides AZOBR_RS04275 and AZOBR_RS04280 are separated by 156 nucleotides AZOBR_RS04280 and AZOBR_RS04285 are separated by 154 nucleotides
AZOBR_RS04265: AZOBR_RS04265 - 2-isopropylmalate synthase, at 899,574 to 901,178
_RS04265
AZOBR_RS04270: AZOBR_RS04270 - RNA methyltransferase, at 901,195 to 901,965
_RS04270
AZOBR_RS04275: AZOBR_RS04275 - response regulator, at 902,019 to 902,732
_RS04275
AZOBR_RS04280: AZOBR_RS04280 - hypothetical protein, at 902,889 to 903,101
_RS04280
AZOBR_RS04285: AZOBR_RS04285 - nitrogen fixation protein CowN, at 903,256 to 903,552
_RS04285
Position (kb) 902
903 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 901.042 kb on + strand at 901.043 kb on - strand at 901.134 kb on + strand at 901.134 kb on + strand at 901.134 kb on + strand at 901.135 kb on - strand at 901.151 kb on + strand at 901.417 kb on + strand, within AZOBR_RS04270 at 901.418 kb on - strand, within AZOBR_RS04270 at 901.694 kb on - strand, within AZOBR_RS04270 at 901.963 kb on + strand at 902.008 kb on + strand at 902.009 kb on - strand at 902.009 kb on - strand at 902.009 kb on - strand at 902.009 kb on - strand at 902.010 kb on + strand at 902.010 kb on + strand at 902.010 kb on + strand at 902.011 kb on - strand at 902.011 kb on - strand at 902.011 kb on - strand at 902.025 kb on + strand at 902.026 kb on - strand at 902.026 kb on - strand at 902.026 kb on - strand at 902.026 kb on - strand at 902.040 kb on - strand at 902.466 kb on + strand, within AZOBR_RS04275 at 902.467 kb on - strand, within AZOBR_RS04275 at 902.467 kb on - strand, within AZOBR_RS04275 at 902.487 kb on + strand, within AZOBR_RS04275 at 902.488 kb on - strand, within AZOBR_RS04275 at 902.826 kb on + strand at 902.826 kb on + strand at 902.826 kb on + strand at 902.826 kb on + strand at 902.826 kb on + strand at 902.827 kb on - strand at 902.883 kb on - strand at 902.883 kb on - strand at 902.916 kb on + strand, within AZOBR_RS04280 at 902.916 kb on + strand, within AZOBR_RS04280 at 902.916 kb on + strand, within AZOBR_RS04280 at 902.917 kb on - strand, within AZOBR_RS04280 at 902.917 kb on - strand, within AZOBR_RS04280 at 902.917 kb on - strand, within AZOBR_RS04280 at 902.941 kb on - strand, within AZOBR_RS04280 at 902.944 kb on - strand, within AZOBR_RS04280 at 903.120 kb on - strand at 903.120 kb on - strand at 903.343 kb on + strand, within AZOBR_RS04285 at 903.344 kb on - strand, within AZOBR_RS04285 at 903.344 kb on - strand, within AZOBR_RS04285 at 903.469 kb on + strand, within AZOBR_RS04285 at 903.469 kb on + strand, within AZOBR_RS04285 at 903.470 kb on - strand, within AZOBR_RS04285 at 903.472 kb on + strand, within AZOBR_RS04285 at 903.472 kb on + strand, within AZOBR_RS04285 at 903.472 kb on + strand, within AZOBR_RS04285 at 903.472 kb on + strand, within AZOBR_RS04285 at 903.472 kb on + strand, within AZOBR_RS04285 at 903.473 kb on - strand, within AZOBR_RS04285 at 903.473 kb on - strand, within AZOBR_RS04285 at 903.473 kb on - strand, within AZOBR_RS04285 at 903.473 kb on - strand, within AZOBR_RS04285 at 903.473 kb on - strand, within AZOBR_RS04285 at 903.473 kb on - strand, within AZOBR_RS04285 at 903.473 kb on - strand, within AZOBR_RS04285 at 903.473 kb on - strand, within AZOBR_RS04285 at 903.473 kb on - strand, within AZOBR_RS04285 at 903.473 kb on - strand, within AZOBR_RS04285 at 903.496 kb on + strand, within AZOBR_RS04285 at 903.496 kb on + strand, within AZOBR_RS04285 at 903.496 kb on + strand, within AZOBR_RS04285 at 903.497 kb on - strand, within AZOBR_RS04285
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 901,042 + -0.2 901,043 - +0.6 901,134 + +0.9 901,134 + -2.3 901,134 + -0.3 901,135 - -0.2 901,151 + +0.9 901,417 + AZOBR_RS04270 0.29 -1.6 901,418 - AZOBR_RS04270 0.29 +0.5 901,694 - AZOBR_RS04270 0.65 -0.4 901,963 + +0.7 902,008 + +0.3 902,009 - -2.8 902,009 - -3.8 902,009 - +1.8 902,009 - -0.5 902,010 + -1.3 902,010 + -0.4 902,010 + +0.8 902,011 - -0.4 902,011 - +0.6 902,011 - +1.0 902,025 + -2.5 902,026 - -0.7 902,026 - +0.1 902,026 - +1.8 902,026 - -1.8 902,040 - -0.5 902,466 + AZOBR_RS04275 0.63 -1.9 902,467 - AZOBR_RS04275 0.63 -2.3 902,467 - AZOBR_RS04275 0.63 -0.4 902,487 + AZOBR_RS04275 0.66 -1.6 902,488 - AZOBR_RS04275 0.66 -1.0 902,826 + -3.0 902,826 + +1.3 902,826 + +1.3 902,826 + +1.0 902,826 + -0.0 902,827 - -1.0 902,883 - +1.0 902,883 - -0.2 902,916 + AZOBR_RS04280 0.13 -1.3 902,916 + AZOBR_RS04280 0.13 +2.0 902,916 + AZOBR_RS04280 0.13 -0.3 902,917 - AZOBR_RS04280 0.13 -3.1 902,917 - AZOBR_RS04280 0.13 -0.1 902,917 - AZOBR_RS04280 0.13 -0.3 902,941 - AZOBR_RS04280 0.24 +5.9 902,944 - AZOBR_RS04280 0.26 +0.8 903,120 - +0.2 903,120 - +0.8 903,343 + AZOBR_RS04285 0.29 +0.8 903,344 - AZOBR_RS04285 0.30 -0.1 903,344 - AZOBR_RS04285 0.30 +1.0 903,469 + AZOBR_RS04285 0.72 -0.0 903,469 + AZOBR_RS04285 0.72 -2.9 903,470 - AZOBR_RS04285 0.72 -0.7 903,472 + AZOBR_RS04285 0.73 +1.9 903,472 + AZOBR_RS04285 0.73 -0.2 903,472 + AZOBR_RS04285 0.73 -0.5 903,472 + AZOBR_RS04285 0.73 -4.4 903,472 + AZOBR_RS04285 0.73 -1.0 903,473 - AZOBR_RS04285 0.73 +1.7 903,473 - AZOBR_RS04285 0.73 -0.1 903,473 - AZOBR_RS04285 0.73 +0.0 903,473 - AZOBR_RS04285 0.73 -1.1 903,473 - AZOBR_RS04285 0.73 +1.6 903,473 - AZOBR_RS04285 0.73 +0.8 903,473 - AZOBR_RS04285 0.73 -0.7 903,473 - AZOBR_RS04285 0.73 +0.2 903,473 - AZOBR_RS04285 0.73 -0.5 903,473 - AZOBR_RS04285 0.73 +0.4 903,496 + AZOBR_RS04285 0.81 +0.8 903,496 + AZOBR_RS04285 0.81 +0.9 903,496 + AZOBR_RS04285 0.81 +0.7 903,497 - AZOBR_RS04285 0.81 +0.1
Or see this region's nucleotide sequence