Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04255 and AZOBR_RS04260 are separated by 131 nucleotides AZOBR_RS04260 and AZOBR_RS04265 are separated by 346 nucleotides
AZOBR_RS04255: AZOBR_RS04255 - hypothetical protein, at 897,750 to 898,715
_RS04255
AZOBR_RS04260: AZOBR_RS04260 - hypothetical protein, at 898,847 to 899,227
_RS04260
AZOBR_RS04265: AZOBR_RS04265 - 2-isopropylmalate synthase, at 899,574 to 901,178
_RS04265
Position (kb) 898
899
900 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 897.917 kb on - strand, within AZOBR_RS04255 at 897.917 kb on - strand, within AZOBR_RS04255 at 897.917 kb on - strand, within AZOBR_RS04255 at 898.075 kb on + strand, within AZOBR_RS04255 at 898.075 kb on + strand, within AZOBR_RS04255 at 898.076 kb on - strand, within AZOBR_RS04255 at 898.150 kb on + strand, within AZOBR_RS04255 at 898.150 kb on + strand, within AZOBR_RS04255 at 898.150 kb on + strand, within AZOBR_RS04255 at 898.150 kb on + strand, within AZOBR_RS04255 at 898.151 kb on - strand, within AZOBR_RS04255 at 898.151 kb on - strand, within AZOBR_RS04255 at 898.151 kb on - strand, within AZOBR_RS04255 at 898.151 kb on - strand, within AZOBR_RS04255 at 898.151 kb on - strand, within AZOBR_RS04255 at 898.151 kb on - strand, within AZOBR_RS04255 at 898.151 kb on - strand, within AZOBR_RS04255 at 898.324 kb on + strand, within AZOBR_RS04255 at 898.324 kb on + strand, within AZOBR_RS04255 at 898.325 kb on - strand, within AZOBR_RS04255 at 898.325 kb on - strand, within AZOBR_RS04255 at 898.325 kb on - strand, within AZOBR_RS04255 at 898.339 kb on + strand, within AZOBR_RS04255 at 898.378 kb on + strand, within AZOBR_RS04255 at 898.378 kb on + strand, within AZOBR_RS04255 at 898.498 kb on + strand, within AZOBR_RS04255 at 898.498 kb on + strand, within AZOBR_RS04255 at 898.498 kb on + strand, within AZOBR_RS04255 at 898.498 kb on + strand, within AZOBR_RS04255 at 898.498 kb on + strand, within AZOBR_RS04255 at 898.499 kb on - strand, within AZOBR_RS04255 at 898.576 kb on + strand, within AZOBR_RS04255 at 898.576 kb on + strand, within AZOBR_RS04255 at 898.576 kb on + strand, within AZOBR_RS04255 at 898.576 kb on + strand, within AZOBR_RS04255 at 898.576 kb on + strand, within AZOBR_RS04255 at 898.576 kb on + strand, within AZOBR_RS04255 at 898.576 kb on + strand, within AZOBR_RS04255 at 898.577 kb on - strand, within AZOBR_RS04255 at 898.577 kb on - strand, within AZOBR_RS04255 at 898.577 kb on - strand, within AZOBR_RS04255 at 898.577 kb on - strand, within AZOBR_RS04255 at 898.577 kb on - strand, within AZOBR_RS04255 at 898.577 kb on - strand, within AZOBR_RS04255 at 899.298 kb on + strand at 899.299 kb on - strand at 899.330 kb on + strand at 899.402 kb on - strand at 899.402 kb on - strand at 899.412 kb on + strand at 899.412 kb on + strand at 899.413 kb on - strand at 899.592 kb on + strand at 899.592 kb on + strand at 899.592 kb on + strand at 899.592 kb on + strand at 899.592 kb on + strand at 899.593 kb on - strand at 899.593 kb on - strand at 899.593 kb on - strand at 899.593 kb on - strand at 899.593 kb on - strand at 899.701 kb on - strand at 899.701 kb on - strand at 899.701 kb on - strand at 900.069 kb on + strand, within AZOBR_RS04265 at 900.069 kb on + strand, within AZOBR_RS04265
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 897,917 - AZOBR_RS04255 0.17 +0.0 897,917 - AZOBR_RS04255 0.17 +0.4 897,917 - AZOBR_RS04255 0.17 -2.3 898,075 + AZOBR_RS04255 0.34 +2.1 898,075 + AZOBR_RS04255 0.34 +1.4 898,076 - AZOBR_RS04255 0.34 -0.0 898,150 + AZOBR_RS04255 0.41 -0.8 898,150 + AZOBR_RS04255 0.41 +1.3 898,150 + AZOBR_RS04255 0.41 -0.9 898,150 + AZOBR_RS04255 0.41 +1.6 898,151 - AZOBR_RS04255 0.42 -2.4 898,151 - AZOBR_RS04255 0.42 -2.7 898,151 - AZOBR_RS04255 0.42 -1.6 898,151 - AZOBR_RS04255 0.42 +0.3 898,151 - AZOBR_RS04255 0.42 +2.0 898,151 - AZOBR_RS04255 0.42 -0.4 898,151 - AZOBR_RS04255 0.42 -3.6 898,324 + AZOBR_RS04255 0.59 +2.0 898,324 + AZOBR_RS04255 0.59 +1.0 898,325 - AZOBR_RS04255 0.60 -1.3 898,325 - AZOBR_RS04255 0.60 +1.5 898,325 - AZOBR_RS04255 0.60 +0.2 898,339 + AZOBR_RS04255 0.61 -1.2 898,378 + AZOBR_RS04255 0.65 +0.7 898,378 + AZOBR_RS04255 0.65 -0.6 898,498 + AZOBR_RS04255 0.77 -0.0 898,498 + AZOBR_RS04255 0.77 +0.6 898,498 + AZOBR_RS04255 0.77 +1.3 898,498 + AZOBR_RS04255 0.77 +0.1 898,498 + AZOBR_RS04255 0.77 +0.8 898,499 - AZOBR_RS04255 0.78 +1.2 898,576 + AZOBR_RS04255 0.86 +1.4 898,576 + AZOBR_RS04255 0.86 -1.3 898,576 + AZOBR_RS04255 0.86 -1.3 898,576 + AZOBR_RS04255 0.86 +0.6 898,576 + AZOBR_RS04255 0.86 +1.4 898,576 + AZOBR_RS04255 0.86 +1.0 898,576 + AZOBR_RS04255 0.86 -1.3 898,577 - AZOBR_RS04255 0.86 +0.4 898,577 - AZOBR_RS04255 0.86 +0.4 898,577 - AZOBR_RS04255 0.86 -0.6 898,577 - AZOBR_RS04255 0.86 -1.8 898,577 - AZOBR_RS04255 0.86 +1.9 898,577 - AZOBR_RS04255 0.86 +0.4 899,298 + +0.9 899,299 - +1.0 899,330 + -5.5 899,402 - +1.2 899,402 - -2.4 899,412 + -0.1 899,412 + -3.0 899,413 - -0.2 899,592 + -3.7 899,592 + -0.3 899,592 + +0.2 899,592 + +1.0 899,592 + -0.5 899,593 - +1.3 899,593 - +0.3 899,593 - +1.9 899,593 - -1.9 899,593 - +1.6 899,701 - -0.6 899,701 - -4.4 899,701 - +1.3 900,069 + AZOBR_RS04265 0.31 +0.6 900,069 + AZOBR_RS04265 0.31 -0.2
Or see this region's nucleotide sequence