Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04255

Experiment: Sisomicin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS04250 and AZOBR_RS04255 are separated by 888 nucleotidesAZOBR_RS04255 and AZOBR_RS04260 are separated by 131 nucleotidesAZOBR_RS04260 and AZOBR_RS04265 are separated by 346 nucleotides AZOBR_RS04250: AZOBR_RS04250 - preQ0 transporter, at 896,397 to 896,861 _RS04250 AZOBR_RS04255: AZOBR_RS04255 - hypothetical protein, at 897,750 to 898,715 _RS04255 AZOBR_RS04260: AZOBR_RS04260 - hypothetical protein, at 898,847 to 899,227 _RS04260 AZOBR_RS04265: AZOBR_RS04265 - 2-isopropylmalate synthase, at 899,574 to 901,178 _RS04265 Position (kb) 897 898 899Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 897.175 kb on + strandat 897.175 kb on + strandat 897.176 kb on - strandat 897.176 kb on - strandat 897.176 kb on - strandat 897.298 kb on + strandat 897.298 kb on + strandat 897.299 kb on - strandat 897.299 kb on - strandat 897.299 kb on - strandat 897.616 kb on + strandat 897.616 kb on + strandat 897.616 kb on + strandat 897.617 kb on - strandat 897.617 kb on - strandat 897.617 kb on - strandat 897.617 kb on - strandat 897.730 kb on + strandat 897.731 kb on - strandat 897.917 kb on - strand, within AZOBR_RS04255at 897.917 kb on - strand, within AZOBR_RS04255at 897.917 kb on - strand, within AZOBR_RS04255at 898.075 kb on + strand, within AZOBR_RS04255at 898.075 kb on + strand, within AZOBR_RS04255at 898.076 kb on - strand, within AZOBR_RS04255at 898.150 kb on + strand, within AZOBR_RS04255at 898.150 kb on + strand, within AZOBR_RS04255at 898.150 kb on + strand, within AZOBR_RS04255at 898.150 kb on + strand, within AZOBR_RS04255at 898.151 kb on - strand, within AZOBR_RS04255at 898.151 kb on - strand, within AZOBR_RS04255at 898.151 kb on - strand, within AZOBR_RS04255at 898.151 kb on - strand, within AZOBR_RS04255at 898.151 kb on - strand, within AZOBR_RS04255at 898.151 kb on - strand, within AZOBR_RS04255at 898.151 kb on - strand, within AZOBR_RS04255at 898.324 kb on + strand, within AZOBR_RS04255at 898.324 kb on + strand, within AZOBR_RS04255at 898.325 kb on - strand, within AZOBR_RS04255at 898.325 kb on - strand, within AZOBR_RS04255at 898.325 kb on - strand, within AZOBR_RS04255at 898.339 kb on + strand, within AZOBR_RS04255at 898.378 kb on + strand, within AZOBR_RS04255at 898.378 kb on + strand, within AZOBR_RS04255at 898.498 kb on + strand, within AZOBR_RS04255at 898.498 kb on + strand, within AZOBR_RS04255at 898.498 kb on + strand, within AZOBR_RS04255at 898.498 kb on + strand, within AZOBR_RS04255at 898.498 kb on + strand, within AZOBR_RS04255at 898.499 kb on - strand, within AZOBR_RS04255at 898.576 kb on + strand, within AZOBR_RS04255at 898.576 kb on + strand, within AZOBR_RS04255at 898.576 kb on + strand, within AZOBR_RS04255at 898.576 kb on + strand, within AZOBR_RS04255at 898.576 kb on + strand, within AZOBR_RS04255at 898.576 kb on + strand, within AZOBR_RS04255at 898.576 kb on + strand, within AZOBR_RS04255at 898.577 kb on - strand, within AZOBR_RS04255at 898.577 kb on - strand, within AZOBR_RS04255at 898.577 kb on - strand, within AZOBR_RS04255at 898.577 kb on - strand, within AZOBR_RS04255at 898.577 kb on - strand, within AZOBR_RS04255at 898.577 kb on - strand, within AZOBR_RS04255at 899.298 kb on + strandat 899.299 kb on - strandat 899.330 kb on + strandat 899.402 kb on - strandat 899.402 kb on - strandat 899.412 kb on + strandat 899.412 kb on + strandat 899.413 kb on - strandat 899.592 kb on + strandat 899.592 kb on + strandat 899.592 kb on + strandat 899.592 kb on + strandat 899.592 kb on + strandat 899.593 kb on - strandat 899.593 kb on - strandat 899.593 kb on - strandat 899.593 kb on - strandat 899.593 kb on - strandat 899.701 kb on - strandat 899.701 kb on - strandat 899.701 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml
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897,175 + -3.6
897,175 + -0.6
897,176 - -2.5
897,176 - +1.7
897,176 - -3.6
897,298 + -0.7
897,298 + -0.0
897,299 - +0.6
897,299 - -0.4
897,299 - -1.8
897,616 + -1.6
897,616 + +0.6
897,616 + +0.3
897,617 - +1.2
897,617 - -4.1
897,617 - +0.4
897,617 - +0.6
897,730 + +0.8
897,731 - -3.0
897,917 - AZOBR_RS04255 0.17 +0.0
897,917 - AZOBR_RS04255 0.17 +0.4
897,917 - AZOBR_RS04255 0.17 -2.3
898,075 + AZOBR_RS04255 0.34 +2.1
898,075 + AZOBR_RS04255 0.34 +1.4
898,076 - AZOBR_RS04255 0.34 -0.0
898,150 + AZOBR_RS04255 0.41 -0.8
898,150 + AZOBR_RS04255 0.41 +1.3
898,150 + AZOBR_RS04255 0.41 -0.9
898,150 + AZOBR_RS04255 0.41 +1.6
898,151 - AZOBR_RS04255 0.42 -2.4
898,151 - AZOBR_RS04255 0.42 -2.7
898,151 - AZOBR_RS04255 0.42 -1.6
898,151 - AZOBR_RS04255 0.42 +0.3
898,151 - AZOBR_RS04255 0.42 +2.0
898,151 - AZOBR_RS04255 0.42 -0.4
898,151 - AZOBR_RS04255 0.42 -3.6
898,324 + AZOBR_RS04255 0.59 +2.0
898,324 + AZOBR_RS04255 0.59 +1.0
898,325 - AZOBR_RS04255 0.60 -1.3
898,325 - AZOBR_RS04255 0.60 +1.5
898,325 - AZOBR_RS04255 0.60 +0.2
898,339 + AZOBR_RS04255 0.61 -1.2
898,378 + AZOBR_RS04255 0.65 +0.7
898,378 + AZOBR_RS04255 0.65 -0.6
898,498 + AZOBR_RS04255 0.77 -0.0
898,498 + AZOBR_RS04255 0.77 +0.6
898,498 + AZOBR_RS04255 0.77 +1.3
898,498 + AZOBR_RS04255 0.77 +0.1
898,498 + AZOBR_RS04255 0.77 +0.8
898,499 - AZOBR_RS04255 0.78 +1.2
898,576 + AZOBR_RS04255 0.86 +1.4
898,576 + AZOBR_RS04255 0.86 -1.3
898,576 + AZOBR_RS04255 0.86 -1.3
898,576 + AZOBR_RS04255 0.86 +0.6
898,576 + AZOBR_RS04255 0.86 +1.4
898,576 + AZOBR_RS04255 0.86 +1.0
898,576 + AZOBR_RS04255 0.86 -1.3
898,577 - AZOBR_RS04255 0.86 +0.4
898,577 - AZOBR_RS04255 0.86 +0.4
898,577 - AZOBR_RS04255 0.86 -0.6
898,577 - AZOBR_RS04255 0.86 -1.8
898,577 - AZOBR_RS04255 0.86 +1.9
898,577 - AZOBR_RS04255 0.86 +0.4
899,298 + +0.9
899,299 - +1.0
899,330 + -5.5
899,402 - +1.2
899,402 - -2.4
899,412 + -0.1
899,412 + -3.0
899,413 - -0.2
899,592 + -3.7
899,592 + -0.3
899,592 + +0.2
899,592 + +1.0
899,592 + -0.5
899,593 - +1.3
899,593 - +0.3
899,593 - +1.9
899,593 - -1.9
899,593 - +1.6
899,701 - -0.6
899,701 - -4.4
899,701 - +1.3

Or see this region's nucleotide sequence