Experiment: Sisomicin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04240 and AZOBR_RS04245 are separated by 4 nucleotides AZOBR_RS04245 and AZOBR_RS04250 are separated by 330 nucleotides
AZOBR_RS04240: AZOBR_RS04240 - cysteinyl-tRNA synthetase, at 893,492 to 894,865
_RS04240
AZOBR_RS04245: AZOBR_RS04245 - putative acyltransferase 3, at 894,870 to 896,066
_RS04245
AZOBR_RS04250: AZOBR_RS04250 - preQ0 transporter, at 896,397 to 896,861
_RS04250
Position (kb) 894
895
896
897 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 894.871 kb on + strand at 894.871 kb on + strand at 895.114 kb on + strand, within AZOBR_RS04245 at 895.115 kb on - strand, within AZOBR_RS04245 at 895.123 kb on + strand, within AZOBR_RS04245 at 895.124 kb on - strand, within AZOBR_RS04245 at 895.124 kb on - strand, within AZOBR_RS04245 at 895.124 kb on - strand, within AZOBR_RS04245 at 895.124 kb on - strand, within AZOBR_RS04245 at 895.306 kb on + strand, within AZOBR_RS04245 at 895.307 kb on - strand, within AZOBR_RS04245 at 895.307 kb on - strand, within AZOBR_RS04245 at 895.307 kb on - strand, within AZOBR_RS04245 at 895.658 kb on - strand, within AZOBR_RS04245 at 896.076 kb on + strand at 896.203 kb on + strand at 896.203 kb on + strand at 896.203 kb on + strand at 896.308 kb on - strand at 896.365 kb on - strand at 896.416 kb on - strand at 896.416 kb on - strand at 896.416 kb on - strand at 896.416 kb on - strand at 896.428 kb on + strand at 896.429 kb on - strand at 896.443 kb on - strand at 896.533 kb on - strand, within AZOBR_RS04250
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.01 mg/ml remove 894,871 + -1.8 894,871 + +1.4 895,114 + AZOBR_RS04245 0.20 -0.0 895,115 - AZOBR_RS04245 0.20 +3.2 895,123 + AZOBR_RS04245 0.21 +1.5 895,124 - AZOBR_RS04245 0.21 -1.1 895,124 - AZOBR_RS04245 0.21 -4.0 895,124 - AZOBR_RS04245 0.21 +0.0 895,124 - AZOBR_RS04245 0.21 +2.4 895,306 + AZOBR_RS04245 0.36 +0.8 895,307 - AZOBR_RS04245 0.37 -0.4 895,307 - AZOBR_RS04245 0.37 -0.4 895,307 - AZOBR_RS04245 0.37 +0.2 895,658 - AZOBR_RS04245 0.66 +1.5 896,076 + +0.5 896,203 + +1.8 896,203 + +0.8 896,203 + +0.1 896,308 - -1.1 896,365 - +0.2 896,416 - +0.5 896,416 - -2.6 896,416 - -2.8 896,416 - -0.4 896,428 + -0.5 896,429 - -0.2 896,443 - -0.2 896,533 - AZOBR_RS04250 0.29 -2.1
Or see this region's nucleotide sequence